Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04968 ATGGAGCTTCAACTTGGTCTCACTCTCTCAAACAATTCCTCTAAGGTATTTGACCTCAACTCTCGTGCCCGCGACTCTATCATCCCTTTCAAACAAAATTCCAGTGTTTCCCACAAGAAACGTACCTTCTCCCAACTCCATAAGGATGAAATCCTTCCTACTCTGTCCCTCCTACCTTCAACACCAGATCATCATGAAAATGATCCTCATCACCACATTCAATGCTCAAACATCATCAAGAACAATGAAGAGGATGTAGTGGGTTGGCCACCAGTGAACTATTGGAGGAAAAAACTTTGTGTCGATGGCTGCGGAGACAACAACGAGGTTGTAGGAAATAACGATCACATGGTATGGGCTGATCACTGTAATGACCATGGTGCTTCTGTCATAAGAGGATCCAATTCTTTATACGTGAAGGTGAAGATGGAGGGCGTGGGAATCGCACGGAAGGTCGATCTCTGCATGCACCAATCATTTCATACTCTCATGAAAACCTTAATGGATATGTTTGGAAAATGTAATCAAGAATCAAACTGCTATGAACTGGCTTATCAGGACAATGAAGGTGACTGGCTTCTCGCACAAGATGTACCGTGGAGAAATTTCATTGGATGTGCACAGCGACTGAGATTGCTGAAGACCAGCACATGA 654 0.4388 MELQLGLTLSNNSSKVFDLNSRARDSIIPFKQNSSVSHKKRTFSQLHKDEILPTLSLLPSTPDHHENDPHHHIQCSNIIKNNEEDVVGWPPVNYWRKKLCVDGCGDNNEVVGNNDHMVWADHCNDHGASVIRGSNSLYVKVKMEGVGIARKVDLCMHQSFHTLMKTLMDMFGKCNQESNCYELAYQDNEGDWLLAQDVPWRNFIGCAQRLRLLKTST 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04968 217 Gene3D - 131 217 - -
Spst3g04968 217 ProSiteProfiles PB1 domain profile. 136 217 IPR000270 GO:0005515
Spst3g04968 217 SUPERFAMILY CAD & PB1 domains 132 212 - -
Spst3g04968 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 217 IPR003311 GO:0005634|GO:0006355
Spst3g04968 217 Pfam AUX/IAA family 2 174 IPR033389 -
Spst3g04968 217 Pfam AUX/IAA family 180 216 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04968 Spst-Chr3 101434663 101435719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04968 139 210 B3 DNA Binding Superfamily AT2G46530 35.135 4.93e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst3g04968 AUX_IAA 3e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04968 K14484 - gmx:100808466 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04968 3 101434663 101435719 Spst3g04968 3 101434663 101435719 ECH