Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04951 ATGTCGAGCTGCAGTATCGATGTTGCGCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACGTCCAAATGCAACAACAGGATTGCAATGCGTGCACCCACCACTCATGTCACTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAGAACTGGGCACATTTCCCCCACATTCACTTCGGGCTGATGTTGGAGAACAACAACCAAGCTAAGATGGAGAATGTTTCTGAGAAGCGTTTAATGTCAAGGGCTGCGCTAATGAATAAATGA 561 0.4884 MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLENNNQAKMENVSEKRLMSRAALMNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04951 186 CDD HMG-box_SF 113 149 - -
Spst3g04951 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
Spst3g04951 186 FunFam Axial regulator YABBY 104 176 - -
Spst3g04951 186 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Spst3g04951 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Spst3g04951 186 Gene3D High mobility group box domain 98 177 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04951 Spst-Chr3 101190569 101193969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04951 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 77.160 2.13e-91 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Spst3g04951 YABBY 2.9e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04951 K25796 - gmx:100804731 380.948