Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04947 ATGGCGACGGAGTTTTATAGAAGGAGTAAACCAAACATGTATGCATTGCTTAATAATGAGGTCATCTTCTCTGATTCGGAAATTCGCCACGAGGAGCTGCAATTGCGAATGAAGGAACGATCGAAAACCATCAAGAAGGTGAGCAGAATGATCGGGAAGTATGAGGTGGGGCGAACTATTGGCGAAGGCACGTTCGCCAAGGTCAAGTTCGCGAGAAACTCCGAAACCGGGGACAGCGTGGCCATTAAAGTAATGGCTAAGACCACTATTCTCCAGCACAGAATGGTTGAGCAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGGTTTTGGCTAGCCGAACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGACAAAATTGTTCAGCAGGGAAAGCTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGATGCGGTTGATCATTGTCATAAGAAGAGTGTGTACCATAGAGACTTGAAGCCTGAAAACCTTCTTCTTGATGCTTATGGAAATTTGAAAGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGTTAGCCTTCTTCACACCACTTGTGGGACTCCAAATTATGTTGCCCCTGAGGTGCTCAGCAGTCAAGGATATAATGGTGCAGCAGCTGATGTTTGGTCCTGTGGGGTTATCCTATATGTTCTAATGGCGGGATATCTCCCTTTTGAGGAGGCAGACCTTCCAACACTGTACAGAAGGATCAATGCTGCGGAATATGTTTGCCCGTACTGGTTTTCTGAGGACACAAAGTCATTCATACATAAAATTCTAGATCCTAATCCTAAAACACGGGTGAAAATTGAAGAAATAAGGAAAGATCCATGGTTCCAGAAAAACTATGTTCCTGTCAAACTCGGGGAAGATGTGCAAGTGAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGATCAATATGTTGCTGAGCGGTCTGAAATTACTGATGGAGGTCCTTTGATAATGAATGCATTTGAGATGATTGCCTTATCACAAGGGTTGAATCTGTCGCCACTGTTTGATAGGCATCAGGATTATGTAAAGCGGCAAACTCGATTTGTCTCCCGGAAACCAGCACAAGTTATAATTTCTTCTGTTGAAGCTATTGCAGAGTCAATGGGACTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTTGAAGGTGTTTCTGCAAACAAGGTTGGGCAATTTGCCGTGGTCTTGGAGGTGTTTGAAGTCGCACCATCCCTTTTCATGGTTGATGTTCGGAAGGCAGCTGGGGATACTTTTGACTACCACAAGTTTTACAAGAATTTTTGTACCAAACTCGGAAGCATTATTTGGAGATCGGCAGGGAGCATGTCAAATTCTAATATGCTTAAGCATATGACTGTATAA 1470 0.4245 MATEFYRRSKPNMYALLNNEVIFSDSEIRHEELQLRMKERSKTIKKVSRMIGKYEVGRTIGEGTFAKVKFARNSETGDSVAIKVMAKTTILQHRMVEQIKREISIMKIVRHPNIVRLHEVLASRTKIYIILEFVMGGELYDKIVQQGKLSENESRRYFQQLIDAVDHCHKKSVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVSLLHTTCGTPNYVAPEVLSSQGYNGAAADVWSCGVILYVLMAGYLPFEEADLPTLYRRINAAEYVCPYWFSEDTKSFIHKILDPNPKTRVKIEEIRKDPWFQKNYVPVKLGEDVQVNLDDVRAVFDDIEDQYVAERSEITDGGPLIMNAFEMIALSQGLNLSPLFDRHQDYVKRQTRFVSRKPAQVIISSVEAIAESMGLKVHSRNYKVRLEGVSANKVGQFAVVLEVFEVAPSLFMVDVRKAAGDTFDYHKFYKNFCTKLGSIIWRSAGSMSNSNMLKHMTV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04947 489 CDD CIPK_C 354 467 - -
Spst3g04947 489 Gene3D Kinase associated domain 1, KA1 348 473 - -
Spst3g04947 489 FunFam Non-specific serine/threonine protein kinase 347 473 - -
Spst3g04947 489 Pfam Protein kinase domain 54 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04947 489 Pfam NAF domain 350 409 IPR004041 GO:0007165
Spst3g04947 489 SMART serkin_6 54 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04947 489 FunFam Non-specific serine/threonine protein kinase 45 133 - -
Spst3g04947 489 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Spst3g04947 489 ProSiteProfiles Protein kinase domain profile. 54 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04947 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Spst3g04947 489 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 48 458 - -
Spst3g04947 489 ProSiteProfiles NAF domain profile. 348 372 IPR018451 GO:0007165
Spst3g04947 489 Gene3D Transferase(Phosphotransferase) domain 1 44 347 - -
Spst3g04947 489 FunFam Non-specific serine/threonine protein kinase 47 347 - -
Spst3g04947 489 SUPERFAMILY Protein kinase-like (PK-like) 50 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04947 Spst-Chr3 101137675 101158508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04947 44 415 CBL-interacting serine-threonine protein kinases AT5G35410 73.118 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Spst3g04947 Pkinase 1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04947 - - gmx:100811380 826.624