Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04937 ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCCGAAATTCGCCACCCACTTCTGAAGAGAAGGGTGTGGCTGGGGACATTTGAAACAGCAGAAGAAGCTGCTAGAGCCTATGATCAAGCCGCGATTCTGATGAGTGGGAGAAATGCCAAAACCAATTTCCCGATAACTCAAACCCCCGAAGGTGATCCAAAGAGCATTGCCAGTGAGGACGGCCCCTCCTCCACCTCGAAGGATCTCGAGGAAATCCTGCATGCAAAGCTTCGAAAATGTGGTAAGGTGCCTTCACCTTCTATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCTGGGAGACGTTCAGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAGAGTACCAACAATGAGACTCATCAGGCTGATAGTAGCACTTCTCTTTCTCCACCTTCTTCCGATCACCACCACCACCATGACTCTCCATCGGCTACGAAAGATCATCGTCAAGAAGTGGTGAGAGGAGAGATTGATGAAGAAGAGAGAATCGCTCTTCAGATGATAGAGGAACTTCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAACAACATTCAAGAAAGCGATGGTGGTGATCATGACACCTTTTTTCTTTAA 687 0.4818 MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSIASEDGPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSTNNETHQADSSTSLSPPSSDHHHHHDSPSATKDHRQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFNNIQESDGGDHDTFFL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04937 228 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Spst3g04937 228 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Spst3g04937 228 MobiDBLite consensus disorder prediction 62 86 - -
Spst3g04937 228 MobiDBLite consensus disorder prediction 162 181 - -
Spst3g04937 228 MobiDBLite consensus disorder prediction 208 228 - -
Spst3g04937 228 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Spst3g04937 228 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Spst3g04937 228 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Spst3g04937 228 MobiDBLite consensus disorder prediction 143 181 - -
Spst3g04937 228 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Spst3g04937 228 MobiDBLite consensus disorder prediction 143 161 - -
Spst3g04937 228 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 167 - -
Spst3g04937 228 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Spst3g04937 228 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Spst3g04937 228 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Spst3g04937 228 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04937 Spst-Chr3 101055795 101056563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04937 1 203 AP2-EREBP Transcription Factor Family AT1G15360 62.201 3.61e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g04937 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04937 - - gmx:100814893 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04937 3 101055795 101056563 Spst9g00793 9 6845099 6845891 ECH
Spst3g04937 3 101055795 101056563 Spst3g04937 3 101055795 101056563 ECH