Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04918 ATGCCATGGTCTTTTGCTTCCCCCTATGTCCCTCCGCATCACCATTCTAACAACATTCCACCTTCCTCCGACGATTCCACGCAGCACGGCTTTGGCCTTGCTGCCGGTGGAGGGTTGCCACGCGGCGCTGGCCGTGGTGGCTCCGGCGGTCGAGGAATCCCTCGCCCTCGCCAGCCTTCTTACCGGAACTCCCGGTTCCCCGTGGTGGAGGAACCACAAAACGGCGACGGTATTAATTTCGATGCGTACGAATCGGTCCCGGTGGAGGCCAGTGGCAAGAACGTGCCTCCGCCGGTGAACGTCTTCGACGATACGGACTTGGACGAAGGCTTGAAGAAGAACATCAAGCGATGCAAGTACGTGAAGCCCACGCCCGTTCAACGTTACGCGATTCCCATAGCCACCGCTGGCCGTGACCTTATGGCTTGCGCACAGACTGGGTCGGGGAAAACGGCGGCGTTTTGCTTTCCTATCATATCTGGGATTTTGAAGGGTCGTTCTTCTTCTGGGTTCTCGCCTGTGTCTCGTGGTGCTGGTGTTGCGTACCCCACTGCGCTTATTTTGTCTCCTACGAGGGAGTTGTCGTGCCAGATACGTGATGAAGCGAACAAATTTGCATATCAAACTGGAGTGAAGGTTGTTGTTGCCTATGGTGGTTCTCCTGTCAGTCAGCAGCTGCGCCTTTTAGAGAAGGGTGTTGACTTACTGGTTGCCACTCCTGGGCGTTTGGTGGATATTATTGAGAGGGATAGGGTTTCGTTGAAGAGAATAAAGTACCTTGCGTTAGACGAAGCTGATCGCATGCTGGACATGGGTTTTGAACATCAAATACGCAAGATTGTAGACAAAATGCACATGCCACCGCCAGGTAGTAGGCAGACATTGTTGTTTAGTGCAACGTTCCCTAATGATATACAGAAGCTAGCATCCGACTTTTTGTCGGACTACATATTCCTGTCTGTGGGGAGAGTCGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATACTGACAAAAGAGACCAACTTGTTGATCATCTTCGTCGGCAAAAGGTGCATGGGACCAATGGGATGGTGGAACATGCTTTAACTCTTGTATTTGTTGAAACAAAAAGAGGAGCAGACGCCTTAGAAAACTGGTTGTCGAAAAGTGGCTTTCCAGCTATTGCCATACACGGAGACAAAGTTCAATTGGAACGGGAACGGGCTTTAAGATCTTTTAAATCTGGAATGACTCCCATTCTGGTTGCAACTGATGTTGCTTCTAGGGGATTGGATATCCCGCATGTGGCTCATGTCATAAACTTTGACTTGCCAAGAGACATTGATGACTATGTTCATAGAATTGGACGAACAGGCCGTGCAGGGAAATCTGGATTAGCTACTGCTTTCTTCAGCGACAAGAACAGTCCAATGGCAAAGGCTCTTGTTGGTCTCTTGCAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCAACCAGTTTGCTGAGTGTTCCTCATTTGGGGGCCGCAGTCGAGGTTATGTATCACAGCGTTACAGCAGTGGTAGCTACGGAGGTCGTGATTTTCGAAATCCCACGGAAGTGCAGAATTACAACTGTCACGGTTCCCATGGCAATACCGATCTTGCTGCGGAGTCTTACACTGCTACCCCATTCGTTGATACCTCCTCCTGCGACCTGCAAAACTCCCATATAGATTCCTCTTTTGACTCCTTGAATATAGGATGCACTTATAATCAAAGTGATGTTAACTCTAGTGAATTGTGTGGAGGTGTTAGGGTTGGTGAAGAGGGGCCTAGTGGTTATGCATCTATTGTTGCCACTGGATGGGATTAG 1848 0.4962 MPWSFASPYVPPHHHSNNIPPSSDDSTQHGFGLAAGGGLPRGAGRGGSGGRGIPRPRQPSYRNSRFPVVEEPQNGDGINFDAYESVPVEASGKNVPPPVNVFDDTDLDEGLKKNIKRCKYVKPTPVQRYAIPIATAGRDLMACAQTGSGKTAAFCFPIISGILKGRSSSGFSPVSRGAGVAYPTALILSPTRELSCQIRDEANKFAYQTGVKVVVAYGGSPVSQQLRLLEKGVDLLVATPGRLVDIIERDRVSLKRIKYLALDEADRMLDMGFEHQIRKIVDKMHMPPPGSRQTLLFSATFPNDIQKLASDFLSDYIFLSVGRVGSSTELIVQKIELVQDTDKRDQLVDHLRRQKVHGTNGMVEHALTLVFVETKRGADALENWLSKSGFPAIAIHGDKVQLERERALRSFKSGMTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPMAKALVGLLQEANQEVPSWLNQFAECSSFGGRSRGYVSQRYSSGSYGGRDFRNPTEVQNYNCHGSHGNTDLAAESYTATPFVDTSSCDLQNSHIDSSFDSLNIGCTYNQSDVNSSELCGGVRVGEEGPSGYASIVATGWD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04918 615 SMART ultradead3 119 334 IPR014001 -
Spst3g04918 615 MobiDBLite consensus disorder prediction 1 76 - -
Spst3g04918 615 Pfam Helicase conserved C-terminal domain 364 460 IPR001650 -
Spst3g04918 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 100 128 IPR014014 GO:0003724
Spst3g04918 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 77 499 - -
Spst3g04918 615 CDD DEADc_DDX3_DDX4 102 325 IPR044763 GO:0003724|GO:0005524
Spst3g04918 615 CDD SF2_C_DEAD 331 469 - -
Spst3g04918 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 499 IPR001650 -
Spst3g04918 615 Pfam DEAD/DEAH box helicase 124 308 IPR011545 GO:0003676|GO:0005524
Spst3g04918 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 478 IPR027417 -
Spst3g04918 615 Gene3D - 322 503 IPR027417 -
Spst3g04918 615 FunFam Probable ATP-dependent RNA helicase DDX4 67 321 - -
Spst3g04918 615 SMART helicmild6 379 460 IPR001650 -
Spst3g04918 615 Gene3D - 62 321 IPR027417 -
Spst3g04918 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 319 IPR014001 -
Spst3g04918 615 FunFam ATP-dependent RNA helicase RhlB 322 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04918 Spst-Chr3 100892788 100895400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04918 98 468 Eukaryotic Initiation Factors Gene Family AT3G19760 33.065 4.42e-57 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04918 K11594 - gmx:100791226 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04918 3 100892788 100895400 Spst3g04918 3 100892788 100895400 ECH