Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04901 ATGGGTTTGTGTGCAGAGAAAAAGCCCAAATCCAAAAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGACACGATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCAGATAAACCTTTTGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCTAAGTTTGATGTTGAGAGAAGAGAGCAGGACACAAGGATTAGCATATGCTGTGCCACAAAACCAGGATTACTACTGTCCACAGTGAACACCCTAGAAGCATTGGGCCTTGAGATTCACCAGTGTGTCATAAGCACTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGCAGCTGAGCAGAGAAATTGTATGA 507 0.426 MGLCAEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNQINLLGISKELKPNEVMVRNSPKFDVERREQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISTSMIFQCKHLAQRQLSREIV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04901 168 SMART finulus 22 71 IPR011598 GO:0046983
Spst3g04901 168 Gene3D - 7 82 IPR036638 GO:0046983
Spst3g04901 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 16 65 IPR011598 GO:0046983
Spst3g04901 168 Pfam Helix-loop-helix DNA-binding domain 22 65 IPR011598 GO:0046983
Spst3g04901 168 CDD ACT_UUR-ACR-like 115 150 - -
Spst3g04901 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 76 IPR036638 GO:0046983
Spst3g04901 168 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04901 Spst-Chr3 100792554 100797823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04901 7 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 71.831 4.75e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g04901 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04901 - - gmx:100806571 283.878