Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04873 ATGTTGGTCTCCATGTCCGTCTGCGGCCAAGAAGAGATTGAACTGTCACGAGATGGCAGCCAGTATAGTCTCTCCACCGGAATACTTCCTTCTCTCGGAGCCAAAAGCAACCGCAAAATCACGCTCCGCAGCTTCATTGTATCGCCCTACGACCGCCGTTACAGGATTTGGGAAACTTTCCTTGTTATTCTGGTAGTTTATACTGCTTGGGTTTCTCCCTTTGAATTCGGATTCCTGAAGAAGCCACAAGCACCCCTTTCCGTTAGTGATAATATTGTCAATGGATTATTTTTCGTGGATATAGTTCTTACCTTCTTCGTGGCTTACATTGACAAAAGCACCTATTTGATCGTGGATGACCGGAAACAGATTGCTTGGAAATATGCAAGGACGTGGTTGGCCTTCGATGTTATCTCCATCGTTCCTTCAGAGCTTGTACAAAAGATATCACCTTCTCCTCTTCAATCTTACGGCTTGTTCAACATGCTTCGCCTTTGGCGTCTTCGAAGAGTCAGTGCCTTGTTTTCTCGGCTTGAGAAGGACAGAAACTACAATTATTTTTGGGTTCGATGTGCTAAGCTTATTTCTGTTACTCTCTTCGCTGTTCACTGTGCGGCATGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCCAAAAAGACATGGATTGGTGCAACGATGGATAATTTCCTCGAACGCAGCTTGTGGTCTAGATATGTGACATCTATTTACTGGTCTATTACCACCTTGACAACTGTTGGTTATGGAGATTTGCATCCAGTGAATTCAAGGGAGATGATCTTTGACATCTTTTATATGCTCTTTAATCTGGGGTTAACAGCATATTTGATTGGTAATATGACCAACTTGGTTGTCCATGGCACGAGTAGAACCAGAAAATTTAGGGATACCATACAAGCTGCCTCAAATTTTGCCCACAGAAATCAATTGCCTCATCGGTTGCAAGACCAAATGCTTGCCCACTTGTGTTTGAAGTACAGAACAGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGAGTCTCTTCCTAAAGCCATCAGATCCAGCATTTCACATCATCTTTTCTATTCTCTGATTGATTCGGTCTACTTGTTTCAGGGGGTTTCTAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGATGTAATCTTGCAAAATGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGAGCTGATAGTTCGTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAGATTGGTGTGCTCTGTTACAAGCCACAGATTTTCACAGTTCGAACGAAGCGACTAAGCCAATTGCTGAGGCTAAACCGTACTACTTTCTTGAGTATTGTTCAGGCCAACGTGGGAGACGGAACCATAATCATGAATAATCTCCTTCAGCATTTGAGAGAGCTCAATGATCCAATCATGGAGGGAGCTTTGGTGGAGATTGAGACCATGTTAGCTCGTGGTAGAATGGACCCACCAGCAGTGACTGTGTGCTTTGCGACAGAAAGAGGAGATGACTTGTTGTTACAACAGTTGCTGAAACAAGGCATGAATGCAAACGAATCCGACATCAATCGAAGAACAGCTTTGCATATAGCAGCATCTCAAGGAGAAGAGAACTGTGTTAAGCTTCTGTTAGATCATGGGGCGAATCCCAACATTACAGATTTGGATGGTAATGTGGCACTGTGGGAGGCTATAGTGGGAGGTCATGAATCAGTGAGCAAGGTGTTGGCAGAAAATGGAGCTAACATGCAATGCGGGGACGTGGGTCAGTTTGCATGTGCTGCTGCTGAGCAGAACAGGCTGAACTTGTTGAAGGAAATAAGGCGCTACGGAGGAGATATCACGCTTCCAAGCATCAATGGTGGGACCACTGCGTTGCACGTTGCAGTATCGGAAGGCAACGTTGACATTGTGAAATATCTTTTGGATCATGGGGCAAGTATTAACAGGCCTGACAGGCATGGCTGGACACCCAGAGATCTAGCAGATCAGCAAGCACATGCAGAAATAAAAGCCATGTTTGACTCCACTGGGGAGCCCAATGTTCAGTCTTTCTTTGCCATTCCCGATAAGCAGAGTAAGATTAAGTATCTTGGAAGGTTTACTAGTGAGCCAACCATTCCTTTACCCCTTGACGGCTCATTTCATGGAACAGATGCCTCTTGGAACCAGAGGCAGAGACAGAGCCAGAACCGTCCAAGGCGTAGGAGCAACAACTATCATAACTCACTCTTCGGGATAATGGTAGCAGCACAAAATTGGGAAAAGGACAAGCTTTTATCTGTTGTCAAGAATAACAATGCAACAAATGACACGAAGAGTGGTAGTGCAGTTGGTCCAACTAGAGTAATCATTAGTTGCCCTGAGAGGGGTGAAGTTGTGGGGAAGCTTGTTTTGCTACCCGGAAGCTTTCAAGAGCTCCTTGAGATTGGAGGAAAAAAATTTGGTTTCTATCCTGCCAAGGTTGTATGTAAAGATGGAGGTCAAATAGAAGATATAGAGGTTATTAGAGATGGTGACCATCTTGTTTTCCTCGGTGCCGGTGGGGTGGCAGAATCGAAGTGTTCAGCTTCAGCACCACTTTCAAATGTTGTGCATATATGA 2688 0.4449 MLVSMSVCGQEEIELSRDGSQYSLSTGILPSLGAKSNRKITLRSFIVSPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQAPLSVSDNIVNGLFFVDIVLTFFVAYIDKSTYLIVDDRKQIAWKYARTWLAFDVISIVPSELVQKISPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLISVTLFAVHCAACFYYLIAARYHDPKKTWIGATMDNFLERSLWSRYVTSIYWSITTLTTVGYGDLHPVNSREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAHRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLESLPKAIRSSISHHLFYSLIDSVYLFQGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELIVRKNGVEQVVGEAKTGDLCGEIGVLCYKPQIFTVRTKRLSQLLRLNRTTFLSIVQANVGDGTIIMNNLLQHLRELNDPIMEGALVEIETMLARGRMDPPAVTVCFATERGDDLLLQQLLKQGMNANESDINRRTALHIAASQGEENCVKLLLDHGANPNITDLDGNVALWEAIVGGHESVSKVLAENGANMQCGDVGQFACAAAEQNRLNLLKEIRRYGGDITLPSINGGTTALHVAVSEGNVDIVKYLLDHGASINRPDRHGWTPRDLADQQAHAEIKAMFDSTGEPNVQSFFAIPDKQSKIKYLGRFTSEPTIPLPLDGSFHGTDASWNQRQRQSQNRPRRRSNNYHNSLFGIMVAAQNWEKDKLLSVVKNNNATNDTKSGSAVGPTRVIISCPERGEVVGKLVLLPGSFQELLEIGGKKFGFYPAKVVCKDGGQIEDIEVIRDGDHLVFLGAGGVAESKCSASAPLSNVVHI 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04873 895 ProSiteProfiles KHA domain profile. 810 890 IPR021789 -
Spst3g04873 895 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Spst3g04873 895 Gene3D - 520 703 IPR036770 -
Spst3g04873 895 ProSiteProfiles Ankyrin repeat region circular profile. 649 681 - -
Spst3g04873 895 Pfam KHA, dimerisation domain of potassium ion channel 810 872 IPR021789 -
Spst3g04873 895 PRINTS EAG/ELK/ERG potassium channel family signature 284 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst3g04873 895 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst3g04873 895 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst3g04873 895 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst3g04873 895 PRINTS EAG/ELK/ERG potassium channel family signature 240 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst3g04873 895 PRINTS EAG/ELK/ERG potassium channel family signature 266 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst3g04873 895 MobiDBLite consensus disorder prediction 737 767 - -
Spst3g04873 895 FunFam Potassium channel KAT2 360 496 - -
Spst3g04873 895 FunFam Potassium channel SKOR 55 293 - -
Spst3g04873 895 ProSiteProfiles Ankyrin repeat profile. 649 681 IPR002110 GO:0005515
Spst3g04873 895 SUPERFAMILY Voltage-gated potassium channels 49 293 - -
Spst3g04873 895 Pfam Ankyrin repeats (3 copies) 525 612 IPR002110 GO:0005515
Spst3g04873 895 Pfam Ion transport protein 55 299 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst3g04873 895 Pfam Cyclic nucleotide-binding domain 392 476 IPR000595 -
Spst3g04873 895 Gene3D Jelly Rolls 337 497 IPR014710 -
Spst3g04873 895 ProSiteProfiles cAMP/cGMP binding motif profile. 372 474 IPR000595 -
Spst3g04873 895 SUPERFAMILY Ankyrin repeat 523 703 IPR036770 -
Spst3g04873 895 SMART ANK_2a 614 644 IPR002110 GO:0005515
Spst3g04873 895 SMART ANK_2a 584 613 IPR002110 GO:0005515
Spst3g04873 895 SMART ANK_2a 649 678 IPR002110 GO:0005515
Spst3g04873 895 SMART ANK_2a 551 580 IPR002110 GO:0005515
Spst3g04873 895 Pfam Ankyrin repeats (many copies) 649 690 IPR002110 GO:0005515
Spst3g04873 895 SUPERFAMILY cAMP-binding domain-like 297 493 IPR018490 -
Spst3g04873 895 Gene3D - 56 293 - -
Spst3g04873 895 CDD CAP_ED 372 477 IPR000595 -
Spst3g04873 895 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Spst3g04873 895 PANTHER POTASSIUM CHANNEL AKT1 20 872 IPR045319 GO:0005249|GO:0006813
Spst3g04873 895 SMART cnmp_10 372 489 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04873 Spst-Chr3 100502852 100509722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04873 14 872 Ion Channels AT2G25600 61.290 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04873 K21867 - gmx:100819491 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04873 3 100502852 100509722 Spst3g04873 3 100502852 100509722 ECH