Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04872 ATGAAGGGGGAAGTACAGCTTCAGCCTCCACCGGTTATGCAAAACCCTAGTGATTCGGACCCTTTGCTTCTTAACCAGGAGGAGGATGAGTCACCAGGAAGCTCTGGTGAGATCAAGGATGATGAAGAAGACGTTGAGGCAGGCTTACTTCCCTGTTGCCGAATTTGCCTCGAAAGCGATTCCGACCCAGAGGATGAACTGATATCTCCATGCATGTGCAAAGGTACCCAACAGTTTGTTCATCGCTCATGTCTTGATCATTGGCGCTCCGTAAAGGAAGGATTTGCCTTCTCGCACTGCACCACTTGCAAAGCCCAATTTCATCTTAGAGTTGAATTGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCTAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAGACTGTGATTGCAGCTATTGGTGCCTTTGCGTTCATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGCTGGGATAGGATACTGTCAAAGCATCCAATTCCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATACCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGTATCCTGGATTGCTTTCCCGCATCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGTAGTATTTCCCCACTGCCTACATTGA 861 0.4564 MKGEVQLQPPPVMQNPSDSDPLLLNQEEDESPGSSGEIKDDEEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGAFAFIMDKDGSFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKVVFPHCLH 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04872 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 117 IPR013083 -
Spst3g04872 286 SUPERFAMILY RING/U-box 51 108 - -
Spst3g04872 286 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 279 - -
Spst3g04872 286 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Spst3g04872 286 SMART ringv_2 52 104 IPR011016 GO:0008270
Spst3g04872 286 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
Spst3g04872 286 CDD RING_CH-C4HC3_MARCH 53 104 - -
Spst3g04872 286 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04872 Spst-Chr3 100491784 100502005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04872 1 286 C3H Transcription Factor Family AT1G11020 76.589 5.87e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04872 - - gmx:100818950 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04872 3 100491784 100502005 Spst3g04872 3 100491784 100502005 ECH