Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04870 ATGATTGGGCCTAGGCCCATGATGATCCATATGGTGCGAAAGAAGAAAGGGGAAAAGGGAAAGGAGATTGGCGTTGCATTGGGGGTGCGTACGTGTAAGTGTTTGGAGTGGGGTCCAGAATCCACCATCTCCGTCGGAGAGAGAAACCAGAGACACAGTACAAAAGGGTTGATCCAGAGGCAGCGAAACCTCGCTTCGTGCCTATCCTCCACCCTCTTTTGGAGAATGGACAAGAAAAAGGTAGCAGTTCCCCTTGTGTGCCACGGCCACTCGCGCCCCGTGGTCGATCTCTTCTACAGTCCTGTTACGCCTGATGGGTTTTTCCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTAAGAAATGGAGAGACTGGAGACTGGATTGGAACATTTGAAGGGCACAAAGGTGCTGTGTGGAGTTGCTGCTTGGATACTAATGCCTTACGTGCTGCAACTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAGCATAAGCATATTGTTCGAGCATGTGCCTTTTCAGAGGATACTCACCTTTTGCTCACTGGGGGAGTCGAGAAAATTCTCCGCATCTATGATATGAATCGGCCTGATGCACCACCCAGAGAAGTGGATAAATCCCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGGGGAGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTTGAAACTAAGTCATCTGTGACTAGTGCTGAAGTGAGTCAAGATGGCCGTTATATTACAACTGCTGATGGTTCCACTGTAAAGTTTTGGGATGCTAATTACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCGGTTTCACTGGAGCCTAAGTATGGGAACAAGTTCGTTGCGGGAGGAGAAGATATGTGGGTTCATGTTTTTGATTTTCATACAGGCAATGAGATTGCATGCAACAAGGGGCACCATGGTCCTGTCCACTGTGTTCGTTTTTCTCCGGGTGGAGAATCCTATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAAACTGGCCCATTGACTCTCGATGACTCGGAGACTTTGTCTGCAAATGGATCAATTGATAAGGTGAAGGTAACTGCAGATGAGGTTTCACGCAAGATTGAGGGTTTTCATGTTGCTGATGAGGGAAAATCTAAAGAAAAGGATGAGGCTGTGGAGGAATCAAACTAA 1284 0.4681 MIGPRPMMIHMVRKKKGEKGKEIGVALGVRTCKCLEWGPESTISVGERNQRHSTKGLIQRQRNLASCLSSTLFWRMDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSETLSANGSIDKVKVTADEVSRKIEGFHVADEGKSKEKDEAVEESN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04870 427 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 82 416 - -
Spst3g04870 427 SUPERFAMILY WD40 repeat-like 80 373 IPR036322 GO:0005515
Spst3g04870 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 373 - -
Spst3g04870 427 FunFam Serine-threonine kinase receptor-associated protein 83 396 - -
Spst3g04870 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 173 IPR001680 GO:0005515
Spst3g04870 427 Pfam WD domain, G-beta repeat 254 289 IPR001680 GO:0005515
Spst3g04870 427 Pfam WD domain, G-beta repeat 169 205 IPR001680 GO:0005515
Spst3g04870 427 Pfam WD domain, G-beta repeat 340 372 IPR001680 GO:0005515
Spst3g04870 427 Pfam WD domain, G-beta repeat 129 164 IPR001680 GO:0005515
Spst3g04870 427 Gene3D - 84 400 IPR015943 GO:0005515
Spst3g04870 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 373 IPR001680 GO:0005515
Spst3g04870 427 SMART WD40_4 125 164 IPR001680 GO:0005515
Spst3g04870 427 SMART WD40_4 80 122 IPR001680 GO:0005515
Spst3g04870 427 SMART WD40_4 167 205 IPR001680 GO:0005515
Spst3g04870 427 SMART WD40_4 292 331 IPR001680 GO:0005515
Spst3g04870 427 SMART WD40_4 334 373 IPR001680 GO:0005515
Spst3g04870 427 SMART WD40_4 252 289 IPR001680 GO:0005515
Spst3g04870 427 SMART WD40_4 209 249 IPR001680 GO:0005515
Spst3g04870 427 CDD WD40 89 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04870 Spst-Chr3 100456730 100461565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04870 84 371 Eukaryotic Initiation Factors Gene Family AT2G46290 29.560 7.74e-39 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04870 K13137 - gmx:100818422 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04870 3 100456730 100461565 Spst3g04870 3 100456730 100461565 ECH