Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04865 ATGATTGTTCTTGGCAGCCATTATGGCATGTTCATGCACACTGTCCGGATATCCAAGCACAACCAAGCTTCAAATTTTGTTTTGACTCCTTCCTTGCTCCTGGTCCCGTTCTGTCGCTGTAATTCAACTTGGGAAGGAGTTAAAGCTCCTTTGTGGTCGCTGAAAAGGAACTATTTGGCAAGTGCAATGAAGGATCCAGTGGAGGATCAAGTGAAATCTAGAAGGGCCCTGCAGAGACCAAGAGACCTTAGAAGAAGAGATAGAAGAAGAAGCCAATGCAAACAAGATAAATTACAAGAAACAGGACTTGACTCTCAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCCAGACCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCTAATCACTTCCTGGCAGATATATCAGCTTCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTTACGTCTCGTAAAACAAGCAAAGCCGTCATAGCTGAGTTGGTGAGACTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGAAAACTCTACACTGCTGGCTTGCTTCCTTTTGCATACAAAGAGTTTTCCATAATATTGAGCGAGGATGATGAGGGTACTGGTAGTACCAGGGAAAGAGAATTTGAAGTGGTGATAAAGTTTGCAGCTCGTGTTAGCATGCATCAATTACGTGAGCTTCTGAGCGGGAAACAAGTTGACACCCCGCAAGAAGCGCTAACTGTCATTGACATTGTATTGAGGGAGCTTGCAGCTCAGAGCTACGTGTCAATTGGGAGGTTTCTCTATTCTCCGGACTTACGAAAACCACAGCAGTTAGGTGGTGGCCTGGAATCATGGCGTGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAATATTGACATGTCATCAATAGCGTTTATTGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCTTTCAAAGCCACTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCTTTAAGAGGTGTTAAAGTCGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATTACAGGATTGACATCACAACCTACAAGGGAGCTCAATTTCCCTGTGGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATTATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGTAAGATAGTTGGGGGTCAGAGATATACTAAAGGGCTTAACGAAAAGCAGATAACATCTCTGCTAAAGGTCTCGTGCCAGAGACCACGTGAACAAGAGACAGATATTGTACAGACTATTCAACAAAATGATTATGAGTGTAATCCCTATGCAAAGGAGTTTGGTATCAGCATTGACAGTAAACTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGCCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTATCCAAGAAATTGCTCGCGGCTTTTGCCAACAGTTGGTTCAAATGTGCCAAATCTCAGGCATGGACTTTTGTCTAGACCCTGTGATTCCAATATATTCAGCAAGACCTGATATGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTACTAGATAAACTTGGTGGGAAAGAACTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGGTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTTCAAAGCACGTATTCAAGATCAATAGACAGTATCTAGCAAATGTGGCCCTAAAGATCAATGTCAAGTTGGGAGGAAGGAACACAGTACTTTTGGATGCCCTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAAGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTATGCAGGATTAGTATGTGCTCAGCCTCATCGTGAGGAACTCATTCAGGATCTTTTCAAATGTTGGAAGGATCCTCATCATGGTATAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCTTTTAAGAAGGCAACAGGACAAAAACCGTTGAGAATAATATTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAAGTTTTGTTGTATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTCTGGAACCAAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAGAAACGGCATCACACGAGACTCTTCTCAAACAACCATGACGACAGAAACAGCACCGATAAGAGTGGGAACATCTTACCTGGTACCGTGGTGGATTCTAAGATCTGTCATCCTACGGAATTCGATTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTATGGGACGAGAACAACTTCACTGCTGATGAGATTCAGTCTCTGACCAACAACTTGTGCTACACATATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCACTTGGCAGCATACAGAGCTCGTTTCTACATGGAACCAGATGTTCATGAGCTTGCTACTCGAGGTGGTAGATCAAAAGATGAGTCAGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2904 0.4287 MIVLGSHYGMFMHTVRISKHNQASNFVLTPSLLLVPFCRCNSTWEGVKAPLWSLKRNYLASAMKDPVEDQVKSRRALQRPRDLRRRDRRRSQCKQDKLQETGLDSQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKAVIAELVRLHRNTDLGMRLPVYDGGRKLYTAGLLPFAYKEFSIILSEDDEGTGSTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSIAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDIVQTIQQNDYECNPYAKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQEIARGFCQQLVQMCQISGMDFCLDPVIPIYSARPDMVKKALKYVHSAVLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKLGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHELATRGGRSKDESVRPLPALKEKVKNVMFYC 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04865 967 Pfam Piwi domain 612 931 IPR003165 GO:0003676
Spst3g04865 967 Gene3D - 680 967 IPR036397 GO:0003676
Spst3g04865 967 Gene3D paz domain 318 442 - -
Spst3g04865 967 ProSiteProfiles PAZ domain profile. 324 438 IPR003100 GO:0005515
Spst3g04865 967 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 110 933 - -
Spst3g04865 967 Pfam N-terminal domain of argonaute 129 262 IPR032474 -
Spst3g04865 967 SMART Piwi_a_2 611 932 IPR003165 GO:0003676
Spst3g04865 967 MobiDBLite consensus disorder prediction 70 96 - -
Spst3g04865 967 CDD PAZ_argonaute_like 323 437 - -
Spst3g04865 967 Pfam Argonaute linker 1 domain 272 321 IPR014811 -
Spst3g04865 967 Gene3D - 502 674 - -
Spst3g04865 967 CDD Piwi_ago-like 482 931 IPR045246 -
Spst3g04865 967 SUPERFAMILY PAZ domain 319 478 IPR036085 GO:0005515
Spst3g04865 967 FunFam Argonaute 10 502 674 - -
Spst3g04865 967 Pfam PAZ domain 349 454 IPR003100 GO:0005515
Spst3g04865 967 ProSiteProfiles Piwi domain profile. 611 932 IPR003165 GO:0003676
Spst3g04865 967 FunFam Protein argonaute-2 317 443 - -
Spst3g04865 967 FunFam protein argonaute 10-like 680 967 - -
Spst3g04865 967 SUPERFAMILY Ribonuclease H-like 601 933 IPR012337 -
Spst3g04865 967 SMART PAZ_2_a_3 328 460 IPR003100 GO:0005515
Spst3g04865 967 SMART DUF1785_2 271 323 IPR014811 -
Spst3g04865 967 Pfam Mid domain of argonaute 521 597 IPR032473 -
Spst3g04865 967 Pfam Argonaute linker 2 domain 466 510 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04865 Spst-Chr3 100421942 100429333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04865 102 967 Eukaryotic Initiation Factors Gene Family AT5G43810 73.630 0.0 1386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04865 K11593 - gmx:100808457 1710.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04865 3 100421942 100429333 Spst3g04865 3 100421942 100429333 ECH