Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04864 ATGACCATAGACGATGATAGCTCTATATATGTAGGGGGTCTCCCCTACGACATCTCCGAAGAAACCATTCGTACTGTCTTCAATTTGTATGGTGCCATTCTCGATGTGAAGATTATCAACGACCAACGTAGTAGGGGGAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCGATCGACGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGTCTCGTGGGGGCAGGTCAAATTTTGGAAGAGAACGGTATTATTATCATAATGATGAGAGGAATGGAGATTGGGATCGTGGGAGAGATCGAGACCGAGATTATGATCATGATAATAATGGTAGGGATGGATACAGGAATCGGAGCAGTGATTGGAGTCGCGACCGTGATAGGTCTCGAGACCGTGAGCAGGACAGGGATAGAAGATTTGAGCACATGCATTATGATCAAGCTAGAGATTCTATGTTAGATAATGACTGGAGTAGAGAGCATGATATAGTTGAAAATGAACAAGAACATAGCAGGGGAGGTGGTGGAGATGTGGATAGAGACCACAACTTGGATTTGAATGCTGACAAGAAAATGGATAGGACAAGTGACCCTGATAGAAGTTTTGATGAGGATAGAAAGGATCACTCAAGGAGAAACAATGACTTGAATGGTACAAATCGACATAGCATGGATCTTTCATCAGAATCAACAGGTGCTCACAATGATCAGGTGGAAGCTCAATTAGAGAGCTCAACACAACAGCTTGATCAACTAAAAAAGGAGGTTTCTCAGATGGAAGAGGGATTGGAAGGGAAAAGGGCCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAACTCTTCATATCGTCAGATGCAGTTAATAAAGCTGCATAAATATTTTCTGCAAGTGAAAGATCACACAGAAAGACTTAAAACTAGTGAAAAGGAACTTCAGGCTCTAATTGATACAGTAATGTTAGAGATTGATGGTGATGGCATTGGATTAAAGGATGGACAACTGACAAATGGGAAGTCTTGA 1089 0.4178 MTIDDDSSIYVGGLPYDISEETIRTVFNLYGAILDVKIINDQRSRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNNGRDGYRNRSSDWSRDRDRSRDREQDRDRRFEHMHYDQARDSMLDNDWSREHDIVENEQEHSRGGGGDVDRDHNLDLNADKKMDRTSDPDRSFDEDRKDHSRRNNDLNGTNRHSMDLSSESTGAHNDQVEAQLESSTQQLDQLKKEVSQMEEGLEGKRAHVKELQKQSKKLEDALINAKKNSSYRQMQLIKLHKYFLQVKDHTERLKTSEKELQALIDTVMLEIDGDGIGLKDGQLTNGKS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04864 362 MobiDBLite consensus disorder prediction 231 260 - -
Spst3g04864 362 Gene3D - 2 97 IPR012677 -
Spst3g04864 362 Coils Coil 247 302 - -
Spst3g04864 362 MobiDBLite consensus disorder prediction 102 156 - -
Spst3g04864 362 CDD RRM_SF 9 80 - -
Spst3g04864 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Spst3g04864 362 PANTHER GEO13361P1-RELATED 7 175 - -
Spst3g04864 362 SMART rrm1_1 8 80 IPR000504 GO:0003723
Spst3g04864 362 MobiDBLite consensus disorder prediction 178 230 - -
Spst3g04864 362 Coils Coil 320 340 - -
Spst3g04864 362 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Spst3g04864 362 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 194 - -
Spst3g04864 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Spst3g04864 362 MobiDBLite consensus disorder prediction 178 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04864 Spst-Chr3 100405340 100408894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04864 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 32.468 2.33e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04864 - - vun:114179118 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04864 3 100405340 100408894 Spst3g04864 3 100405340 100408894 ECH