Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04859 ATGAACAACCTGGCTTCCAGGGAATTTCTGGAGAACAGGTTAGATTTATATATCTACGATTATCTCGTGAAGAGACAATTGCATGCTACGGCAAGAGTATTTCAGGCTGAAGGAAATGTCTCAACAGGTCCTGTTGTTATTGAAGCACCTAGTGGTTTTCTCTTTGAGTGGTGGTCCGTCTTCTGGGACATATATATTGCGAGGGCAAATCAGAAGCACACAGAAGCATCAAATCAACAAATTAAAGCTCGATTAATGCATAAGCAAGAACAACAAGAGCTTCAAAATACAAACCAGAGTCAACAAACACACATGCAACACTTGTTGCAAAGACGAGCTCAACAGCAGCAACGTCCCAGTGGAACTCAACTTATTAGTGGCAGTGCGAGCTGTCCTATTAGCAATGATCCTTTGATGAGGCAGAACCAGGCAGCTTCTAATGCTATGGCAACAAAATTATTTGAGGACAGGTTGAAGCTTCCGCGTCAGAGAGATGCTTTAGAAGATGCAATTATTAAGCAAAAGGTAGATAATGACGTTGGTCAACTTCAAAACCCAAACCATGCAGAATTATTAAAAGCAGCCGGAAAATCTGGTGAACTGGCTTCAGGACAGACATTGCTCAGTGCTCCAAGCATTTTACAGGGGAACATTCAACATGTTCAAAATCTGAACCAGAAACTTCCAGGGTCTACGCAAGACATAAAGAGTGAGATGAATGCATTGCTGAGATCTCAAGCTGCTGTTTCAGAAGGATCCTTTATTGGTTGTCATGGTTCAAATCCAGGTTGTAGCAATTTAACTCTGAAAGGATATCCTCTACCAGGACTGGATGAGGTTCGCTCTGGCATTCTCCAGCCAAATAATTTGATGCAGTCTCCACAATCTTTCGATCAACTTTCTCTACGGCAGCAACTTATGCTTCAGGCGCAACAAAATTTGATTTCTCCTTCTGTCATTGATTTTGAGAGAAGAAGACTTGGGATGCTTTTTAACAATCAAAACAAGGGTCTTGTGAAAGATGGCCAATCAAATTCTGTAGATGATTTGGTTCCCAGTAATGGATATCCTGCACCAGTTGGTTCCCTAATGTTGCCCCATCCAGACTCAGATGTGTTAAAGCAACAAATTCAAAATAGCAGTCAGCAGCTTCAACAATATACACAGCATCCTCTTCCAAGCCAGCCGTCTGAGAATCTCCAGCAGCAAGAAAAACCTTGTCCTGGTCCTGGAAACAGGACGGGAGAGGGAAATGTGTCCAATACCTTACAAGGAGACGATCAGGCTCCTAAAAGTCAAACAGTGCGAAAGCGAAAATCAGCATCATCTTCAGGTCTTGGCAATAGCTCTGGAACTGCAAACACCACAGGACCAACTGCCAGCTCACCTTCAACACCATCTACACAAACACCTGGAGAGATGATGACAGCTGAAATGGATCAACTTGTGGGTGATGGATGTTTGGGTGACAATATTGAGTCATTCTTATCTCCTGATGCTACCGACATCAGAGAAAAAGTTGGCAAAGGATTCATCCTCAAGGAGATCAAGCATATAATGGCGAGTTCGCATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTTCTTGTTACTGGTGGCCATGATAACAAGGTTTCTTTGTGGTGCACCGAATCGTTTAACCAGAAATGTATACTTGAAGAGCACAATGAATGGATAACTGATGTTCGATTTTGTCCAAATATGTTGCGTGTTGCCACATCCTCAGCAGACAAAACTGTTCGGGTTTGGGATGTTGATAATCCAAGTTATTCTCTTCGAACATTCACTGGACATGCTACAACTGTGACTTCTCTTGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCTTGTGATGATAGTGAGATAAGATACTGGAGCATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACCCAGGTGAGATTTCAACCTTGTTTTGGAAGGCTTGTTGCAGCTGCTGTAGATAATTTTGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGCAAGTGTTTAGCGGTGAGAGGAACAGAGATAACATACTGTTGAAAGGGTGGCCAGGTGCCCAAGGCTCCTCCTTCCTACCACTGGGCCATAATAATGTTGTCCGTTCTGTATGCTGGAACTTGTCTGGAAAATATCTGGCTTCCCTTAGTGATGATCTGGTTAGAGTATGGAATGTTGGATCTGGTGGCAAAGGGGAATGCATTCACGAGTTGGCTGGGAATAAATTCAATACCTGTGTTTTCCATCCCTCATATCCTTTACTGGCAATTGGTTGCAATGAGACTCTTGAGCTGTGGAACTTCGGTGAGAAAAAGACATTGACTAGGCATGCACACGAAAAGGCTGTATCTTCCTTGGCAGTATCAGATGTTACTGGGTTGCTGGCTTCAACTAGTCATGACAAACATTTCAAGATCTGGAGCTGGAAGTGA 2490 0.4273 MNNLASREFLENRLDLYIYDYLVKRQLHATARVFQAEGNVSTGPVVIEAPSGFLFEWWSVFWDIYIARANQKHTEASNQQIKARLMHKQEQQELQNTNQSQQTHMQHLLQRRAQQQQRPSGTQLISGSASCPISNDPLMRQNQAASNAMATKLFEDRLKLPRQRDALEDAIIKQKVDNDVGQLQNPNHAELLKAAGKSGELASGQTLLSAPSILQGNIQHVQNLNQKLPGSTQDIKSEMNALLRSQAAVSEGSFIGCHGSNPGCSNLTLKGYPLPGLDEVRSGILQPNNLMQSPQSFDQLSLRQQLMLQAQQNLISPSVIDFERRRLGMLFNNQNKGLVKDGQSNSVDDLVPSNGYPAPVGSLMLPHPDSDVLKQQIQNSSQQLQQYTQHPLPSQPSENLQQQEKPCPGPGNRTGEGNVSNTLQGDDQAPKSQTVRKRKSASSSGLGNSSGTANTTGPTASSPSTPSTQTPGEMMTAEMDQLVGDGCLGDNIESFLSPDATDIREKVGKGFILKEIKHIMASSHKVECCHFSSDGKLLVTGGHDNKVSLWCTESFNQKCILEEHNEWITDVRFCPNMLRVATSSADKTVRVWDVDNPSYSLRTFTGHATTVTSLDFHPSKDDLICSCDDSEIRYWSIKNGSCTGVFKGGATQVRFQPCFGRLVAAAVDNFVSIFDVETLGCRLKLQQVFSGERNRDNILLKGWPGAQGSSFLPLGHNNVVRSVCWNLSGKYLASLSDDLVRVWNVGSGGKGECIHELAGNKFNTCVFHPSYPLLAIGCNETLELWNFGEKKTLTRHAHEKAVSSLAVSDVTGLLASTSHDKHFKIWSWK 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04859 829 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 826 IPR044716 GO:0003714
Spst3g04859 829 SUPERFAMILY WD40 repeat-like 513 827 IPR036322 GO:0005515
Spst3g04859 829 SMART WD40_4 704 744 IPR001680 GO:0005515
Spst3g04859 829 SMART WD40_4 788 827 IPR001680 GO:0005515
Spst3g04859 829 SMART WD40_4 639 675 IPR001680 GO:0005515
Spst3g04859 829 SMART WD40_4 554 593 IPR001680 GO:0005515
Spst3g04859 829 SMART WD40_4 750 786 IPR001680 GO:0005515
Spst3g04859 829 SMART WD40_4 597 636 IPR001680 GO:0005515
Spst3g04859 829 SMART WD40_4 512 551 IPR001680 GO:0005515
Spst3g04859 829 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 795 829 - -
Spst3g04859 829 Gene3D - 513 708 IPR015943 GO:0005515
Spst3g04859 829 Pfam WD domain, G-beta repeat 751 786 IPR001680 GO:0005515
Spst3g04859 829 Pfam WD domain, G-beta repeat 715 744 IPR001680 GO:0005515
Spst3g04859 829 Pfam WD domain, G-beta repeat 559 593 IPR001680 GO:0005515
Spst3g04859 829 Pfam WD domain, G-beta repeat 793 827 IPR001680 GO:0005515
Spst3g04859 829 Pfam WD domain, G-beta repeat 523 550 IPR001680 GO:0005515
Spst3g04859 829 Pfam WD domain, G-beta repeat 601 636 IPR001680 GO:0005515
Spst3g04859 829 Gene3D - 709 829 IPR015943 GO:0005515
Spst3g04859 829 SMART Lish 10 42 IPR006594 GO:0005515
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 550 IPR001680 GO:0005515
Spst3g04859 829 MobiDBLite consensus disorder prediction 372 472 - -
Spst3g04859 829 Pfam LisH 13 38 IPR006594 GO:0005515
Spst3g04859 829 Coils Coil 370 390 - -
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 519 550 - -
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 604 641 - -
Spst3g04859 829 CDD WD40 515 827 - -
Spst3g04859 829 ProSitePatterns Trp-Asp (WD) repeats signature. 580 594 IPR019775 -
Spst3g04859 829 MobiDBLite consensus disorder prediction 336 472 - -
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 596 - -
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 602 IPR001680 GO:0005515
Spst3g04859 829 MobiDBLite consensus disorder prediction 87 127 - -
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 645 IPR001680 GO:0005515
Spst3g04859 829 ProSiteProfiles Trp-Asp (WD) repeats profile. 795 829 IPR001680 GO:0005515
Spst3g04859 829 MobiDBLite consensus disorder prediction 336 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04859 Spst-Chr3 100342246 100354085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04859 513 681 Miscellaneous Gene Families AT5G08390 25.424 1.61e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Spst3g04859 WD40 0.023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04859 - - vun:114177037 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04859 3 100342246 100354085 Spst3g04859 3 100342246 100354085 ECH