Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04846 ATGTCATCAAGTGGAACCCTTTGGAGCTACGAGGAAGAAAAAGCATTTGAGAATGCCATAGCTATGCATTGGAATGAGGAAGACTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAACAAAAGCATGGAAGAAGTGAAGCAGCATTACCAGGTTCTAGTAGAGGATGTAAGTGCAATAGAGGCAGGTCACATATCATTCCCCAAATATGCTTCTGAGGAAACCACATCTTCAAATAAGGACTTTCATGGCTGTTCCAAGGCCACAAGTGCTGATAAAAGATCAAATTGTAATTATGGAAGTGGTTTTTCTGGGTTAGGACATGATTCCACCACTAACAGTAGTGGTAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACTGAGGAGGAACACAGGTTATTTTTACTCGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACACCAACACAAGTGGCTAGCCATGCACAGAAGTATTTCATAAGGTTGAATTCTATGAATAGGGACAGGAGGAGGTCAAGTATCCATGATATAACTAGTGTGAACAATGGAGATGTGGCTAATAATCAAGCACCAATTACAGGGCAACATAGTAGCTCAGTTTCTTCAAGTACAATGGGTGTAGGACAATCACTGAAGCATAGAGTTCAGGGTCACATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGCCATCCTGTGGCTGCTCCTCCAGGGCATATGGCATCTGCAGTTGGCACTCCTGTCATGCTTCCTCCTGGACCCCACCCCCATCCTCATCCCCATCCCCATCCCCATCCCCATGGTCATCCTCATCCACCTTATGTTCTTCCACTTGCTTACCCAATGGCACCTCCAACAATGCATCAATAA 936 0.4434 MSSSGTLWSYEEEKAFENAIAMHWNEEDSKEQWEKIASAVPNKSMEEVKQHYQVLVEDVSAIEAGHISFPKYASEETTSSNKDFHGCSKATSADKRSNCNYGSGFSGLGHDSTTNSSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHSSSVSSSTMGVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHPHPHPHPHGHPHPPYVLPLAYPMAPPTMHQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04846 311 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Spst3g04846 311 Gene3D - 134 186 - -
Spst3g04846 311 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Spst3g04846 311 FunFam Transcription factor SRM1 1 69 - -
Spst3g04846 311 Gene3D - 1 69 - -
Spst3g04846 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Spst3g04846 311 CDD SANT 8 56 IPR001005 -
Spst3g04846 311 MobiDBLite consensus disorder prediction 105 123 - -
Spst3g04846 311 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Spst3g04846 311 PANTHER TRANSCRIPTION FACTOR KUA1 4 305 - -
Spst3g04846 311 SMART sant 132 182 IPR001005 -
Spst3g04846 311 SMART sant 4 58 IPR001005 -
Spst3g04846 311 CDD SANT 135 180 IPR001005 -
Spst3g04846 311 ProSiteProfiles SANT domain profile. 1 52 IPR017884 -
Spst3g04846 311 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Spst3g04846 311 MobiDBLite consensus disorder prediction 271 299 - -
Spst3g04846 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Spst3g04846 311 MobiDBLite consensus disorder prediction 75 94 - -
Spst3g04846 311 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Spst3g04846 311 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Spst3g04846 311 FunFam transcription factor MYB1R1 134 185 - -
Spst3g04846 311 MobiDBLite consensus disorder prediction 105 134 - -
Spst3g04846 311 SUPERFAMILY Homeodomain-like 6 61 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04846 Spst-Chr3 100211589 100212724 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04846 Myb_DNA-binding 3.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04846 - - gmx:778049 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04846 3 100211589 100212724 Spst3g04846 3 100211589 100212724 ECH