Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04844 ATGGCTGAAAATTTCGACGTCATAACGAATAAGCTCCCTGAGCTGAAATTAGATTCTAAGCAAGCGCAAGGGTTTATATCATTTTTCAAAAACCTACCTGATGATCCAAGGGCTGTACGGCTTTTTGATCGCCGGGACTACTGTACTGCCCATGGCGACAATGCAACTTTCATTGCAAAGACCTACTACCACACTACTACTGCTATGCGACAACTGGGTAGTGGATCACATTCTCTTTCCAGTGTTAGTGTCAGCAGGAACATGTTTGAAACAATTGCTCGTGATCTCCTTTTGGAGAGAACAGATCATTCTCTTGAGCTCTATGAAGGTAGTGGTTCTAATTGGAAACTGGTAAAAAGTGGAACACCTGGTAATATTGGTAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCTGTTGTTGTTGCTTTGTCACTTAACTTCCGTGAAAATGGTTGCACCATTGGGTTAGGATTTGTTGATCTAACTAAGAGAGTACTTGGGATGGCTGAATTCCTTGATGACAGTCACTTCACAAATGTGGAGTCAGCATTGGTTGCACTTGGCTGCAAAGAGTGCCTTCTGCCCATAGAGCCTGGCAAATCCATTGAAAATAGAATGTTGTGTGATGTGTTGACCAAATGTGGTGTGATGTTAACTGAGAAAAAGAAATCTGAATTTAAAACCAGGGATCTGGTGCAGGATCTTGGCAGGCTTGTTAAAGGTCCTATTGAACCAGTACGAGATTTAGTATCTGGATTTGAATTTGCACCTGGTGCTTTGGGGGTGTTACTATCTTATGCAGAGTTACTTGCAGATGAAAGCAATTATGAAAATTATATTCTTCGTAAGTACAATCTTGACAGCTATATGAGGTTAGATTCTGCAGCCATGAGAGCACTTAATGTCTTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGGTTATTGCACATCTGGCTTAAACAGCCGTTAGTAGATGTAGAGGAAATTAATTCCAGGCTGGACATAGTACAAGCATTTGTAGAGGACACTGTGCTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGACTGATGCACAGTCTGCAGAAGCAGCGAGCTGGTCTGCAACATATTGTTAAACTTTATCAGTCAAGTATCAGACTACCTTACATCAAAAGTGCTTTGAAAATATATGATGGAAAATTTTCCTCAATGATGAGGAGTAGGTATTTGGAGCCTCTTGAGTTATGGACTGATGATGAGCATCTGAACAAATTCATTGGGCTCGTGGAAGCTTCTGTTGACCTCGATCAACTGGAGAACAGGGAATACATGATTTCTCCAAGCTATGACTCAACACTAGCTAACCTAAAGGAGCAGCAGGAGTTACTAGAGAGCCAAATACATAATTTGCATAGACAAACTGCTGATGATCTTGATCTACCTATAGATAAGGCATTAAAGTTGGACAAGGGCACACAATTTGGACATGTTTTTAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAGAAGCTCAATACCCAGTTTATTGTACTGGAAACCCGTAAAGATGGAGTGAAATTTACCAACACAAAGCTCAAAAAACTAGGGGATAAATATCAACAAATTCTTGAGGAGTACAAAAGTTGTCAAAAAAAGTTAGTTGATAGGGTAGTTCAAACTGCGACAACTTTTTCTGAGGTGTTTGCATCATTAGCGGAAATAATTTCTGAATTGGATGTATTACTGAGCTTTGCTGATTTGGCTTCTAGCTGCCCTACTCCCTACACAAGACCTGATATCACTCCATCGGATGAAGGAGATATTATTTTAGAAGGCTGCAGACACCCTTGTGTAGAAGCCCAAGACTGGGTGAATTTTATACCAAATGATTGTAGGCTTGTGGGTGTCAATATTTTGATGGCACAAGTTGGTTCCTTTGTTCCTTGTGACAAAGCCAGCGTATCTGTACGTGATTGTATTTTTGCCCGTGTGGGTGCTGGTGACTGCCAAGTGAGTCCTATAACATATCCTTTGGCCCCGTTAGTTGCATATCCCCCACCCCCCCTCTCTGAAACTCTACGTGGTGTTTCTACCTTCATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGCGCAACTGAAAAGTCCTTGATAATCATTGATGAGTTGGGGCGTGGGACATCAACCTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTTATCAAAGCACCTACTTTGTTTGCCACTCACTTTCACGAACTGACTGCATTAGCCCTTGAAAATGGAAGTAATGATCTACAGAAGCAAATTGTTGGCGTGGCAAACTATCATGTTAGTGCACATATTGACTCATCAACTCGAAAGCTAACTATGCTATACAAGGTTGAACCTGGAGCTTGTGATCAGAGTTTTGGTATTCATGTTGCCGAGTTTGCAAACTTCCCTGAAAGTGTTGTAACCCTAGCTAGAGAAAAGGCCGCAGAATTAGAAGACTTTTCTCCTCCAGCAATATCCTTGATTGATACTAACCAGGAGGGGGGTTCTAAACGTAAGAGAGTATTTGAACCCGACGACATGTCTCGAGGGTCTGCAAGGGCTCGGCAATTTCTCGAAGCTTTTGTTGCTATGCCACTAGAGACCATGGACAAGGTACAAGCTTTGCAAGAAGTGAGGAAGTTAGCAGATACTTTGGAGAAGGATGCAGAAAACTGGCTTCTTGCTGTACATGATGTGTTCAATGGGTTAGGAGTGCTTCTTATCCAGGTCTACACTCAAATCAAATCGTTAGTCACTTTTCCCAATGCCTGGTTGTGTGCAAGGGATAGATATCAATCAGGAAGGAAAGGGAAAGAGTTTGGGAAGATGAGCTGGCGCAGGGTGTTGAACTCAGCACAGGCCCTGGCTGCACACACCTTCCTGTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTGTTCTTGGTGTAGAATCGGTCCTGGTAGATTGGAAATTGGAGATTGGGGTGAAGATGATCGTGAACTAAAGGTGATATTTTTGCCTCTTTGGATGTTCCATGGTGTTGTGGCTCGTGGAAGGTTTTCATTACCTGCACCATCTGCCCCACGAAATCGAAATTGGGCACCATGTCATGCCGTTGTTGCAACGCCGTTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTAAATGATCTTGGCTCTGCAGCAGTTGATCTAAAGATTGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATTTCTATGGTGTTCTTCATTGCTGCTACAGTCTTTACACTCCTAAAACTGAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACCTGTTTATTAACTTTGCTATTGCCGAATGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCAGTAATTCATAGAAATTCAAGAGAAGCCAGTAGTTCAACATCAACTACGATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGATGAAAATAGACACGAGGGGAGAATGTGTAGCCTGCAAGACATTGGGGGTCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTCTGTATGCATCTAGAGGGAACACCTGCTTGTGCTGTATATATACCACTTCCAGTTCTTTTCTCTCCCCTTTTCCTACTTCAAGGAGCTGGAGTACTGTTATCTGCATCAAAATTAGCTGAGAAACTTGTGCTTCTGCTACGAAGCGGAGCTGGTGGAGGAATTTATTTTAGATTTTCTTCAAGAGCTCACGATTGCTTGGGATTCTTGCATCATGGTTCCAGATTATTAGGTTGGTGGTCAATTGATGAAGGAAGTCGGGAAGAACAAGCACGATTATACCATGAGGGAGCATCTGGGTATAATACGTTTTGTGGTTATCCTCCTGAGATTGTCAAGAAAATGCCGAAAAAGGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACTGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGCCATCCACAAGGGCAAGGACGAATGGGGTATCATTCGGTTAGAATATTGTTTATGTGTGGACCCTGTTCTGACTTCTGATGTTGTAAATCAGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAACGTCGTATTGCTCCCATGTAGGCATCGCGTCCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGTCCGATTTGCCGTGACTCTATTGCTGAGCGTCTGCCTATGGGTTCGTGCTAGGAACTACGTCTTGGTAACTCCTATATTCAGGTTTTCTAGCTGGAAACAGTTGTCAGAAGTGGTGTTGATGACATTTTGA 4581 0.4202 MAENFDVITNKLPELKLDSKQAQGFISFFKNLPDDPRAVRLFDRRDYCTAHGDNATFIAKTYYHTTTAMRQLGSGSHSLSSVSVSRNMFETIARDLLLERTDHSLELYEGSGSNWKLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESALVALGCKECLLPIEPGKSIENRMLCDVLTKCGVMLTEKKKSEFKTRDLVQDLGRLVKGPIEPVRDLVSGFEFAPGALGVLLSYAELLADESNYENYILRKYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHIWLKQPLVDVEEINSRLDIVQAFVEDTVLRQDLRQHLKRISDIERLMHSLQKQRAGLQHIVKLYQSSIRLPYIKSALKIYDGKFSSMMRSRYLEPLELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSTLANLKEQQELLESQIHNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDKYQQILEEYKSCQKKLVDRVVQTATTFSEVFASLAEIISELDVLLSFADLASSCPTPYTRPDITPSDEGDIILEGCRHPCVEAQDWVNFIPNDCRLVGVNILMAQVGSFVPCDKASVSVRDCIFARVGAGDCQVSPITYPLAPLVAYPPPPLSETLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENGSNDLQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPPAISLIDTNQEGGSKRKRVFEPDDMSRGSARARQFLEAFVAMPLETMDKVQALQEVRKLADTLEKDAENWLLAVHDVFNGLGVLLIQVYTQIKSLVTFPNAWLCARDRYQSGRKGKEFGKMSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSCSWCRIGPGRLEIGDWGEDDRELKVIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLNDLGSAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSTSTTIRYLDWNSGLVVSTDENRHEGRMCSLQDIGGHFMKVPIIVFQVLLCMHLEGTPACAVYIPLPVLFSPLFLLQGAGVLLSASKLAEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNAIHKGKDEWGIIRLEYCLCVDPVLTSDVVNQRKCYAEFVLRERLTSYCSHVGIASFAALAQRSVRSVRFAVTLLLSVCLWVRARNYVLVTPIFRFSSWKQLSEVVLMTF 1526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04844 1526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 860 IPR027417 -
Spst3g04844 1526 Gene3D - 618 940 IPR027417 -
Spst3g04844 1526 FunFam DNA mismatch repair protein MSH2 514 617 - -
Spst3g04844 1526 Pfam Transmembrane Fragile-X-F protein 1043 1294 IPR019396 -
Spst3g04844 1526 ProSitePatterns DNA mismatch repair proteins mutS family signature. 739 755 IPR000432 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Gene3D - 524 617 - -
Spst3g04844 1526 Gene3D - 295 523 - -
Spst3g04844 1526 Coils Coil 371 391 - -
Spst3g04844 1526 FunFam DNA mismatch repair protein 295 512 - -
Spst3g04844 1526 Pfam MutS family domain IV 470 567 IPR007861 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Coils Coil 474 494 - -
Spst3g04844 1526 SMART DNAend 315 643 IPR007696 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Pfam MutS domain V 715 859 IPR000432 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Pfam MutS domain V 654 693 IPR000432 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Pfam MutS domain III 301 607 IPR007696 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 984 1418 - -
Spst3g04844 1526 Gene3D DNA repair protein MutS, domain I 8 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Coils Coil 916 936 - -
Spst3g04844 1526 Coils Coil 554 574 - -
Spst3g04844 1526 FunFam DNA mismatch repair protein 123 292 - -
Spst3g04844 1526 SUPERFAMILY DNA repair protein MutS, domain III 298 612 IPR036187 -
Spst3g04844 1526 SMART mutATP5 646 856 IPR000432 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 FunFam DNA mismatch repair protein 8 122 - -
Spst3g04844 1526 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Spst3g04844 1526 Pfam MutS domain II 144 283 IPR007860 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04844 Spst-Chr3 100181940 100205021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04844 984 1391 C3H Transcription Factor Family AT1G18470 72.616 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04844 K08735 - gmx:100792272 1656.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04844 3 100181940 100205021 Spst3g04844 3 100181940 100205021 ECH