Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04839 ATGAGCATAGAGCCAAGTGGGATTGAGTTTAGGCATTACAATAACAGAATTGGATCTGGTCTGCATGGGATGAGTATTGACAGGATAAGAACAAAAGGAGCAAAAATTTATAGTGCTGCTGTAGCTGCTACAGCTGATGGTCATCAGACAGCAAAAGAGGGAGAAGAAAAGATTTATGATGTAATTAGGTACAGACTACATCGCATGAAGCATAAGCTGAAAGATGAGTTGGAGAACAAAAACACCCTTCAGGAATATATATGTCCAAACTGTGGAAAAAGATACAATGCTTTGGATGCTCTGCGGTTATTATCGTTTGAAGATGAGGACTTCCATTGTGAAAGTTGTGATGGAAAACTAGAGGTTGAAATTGATAAGATAGCTGCTCAAGATGGGGGAGATGGAGATGATAATGCTAGAAGACGACGACGGGAGAAGTTAAAGGACATGCTTCAAAAGATGGAGGTTCTTATCTGA 477 0.3983 MSIEPSGIEFRHYNNRIGSGLHGMSIDRIRTKGAKIYSAAVAATADGHQTAKEGEEKIYDVIRYRLHRMKHKLKDELENKNTLQEYICPNCGKRYNALDALRLLSFEDEDFHCESCDGKLEVEIDKIAAQDGGDGDDNARRRRREKLKDMLQKMEVLI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04839 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 132 IPR013083 -
Spst3g04839 158 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT 57 156 IPR039997 -
Spst3g04839 158 SUPERFAMILY Zinc beta-ribbon 72 122 - -
Spst3g04839 158 SMART tfiie3 2 134 IPR002853 GO:0006367
Spst3g04839 158 FunFam Transcription initiation factor IIE subunit alpha 72 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04839 Spst-Chr3 100108386 100111483 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g04839 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04839 K03136 - gmx:100810405 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04839 3 100108386 100111483 Spst3g04839 3 100108386 100111483 ECH