Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04834 ATGATTCCGTCGTCACGTCATCACTCCGTGACGCTCCCGGAGATACAGACTATCGCAGATGGCCAAGTGGCACCCCGGACATCGGAAAACCTAAACCTCGAACCTGGCATTGAAAAGAGGAAAGGAGAGAAAGAGGTTCTGAAATCAAGTTCAAAGCCGTTGAAAGAAAAAACTACCAAGGCGGAGAGACGAGCAATGCAGGAGGTACAGAGAGCTGCTAAAGCTTCTTGTAAAGCTGAGGGAAGTAAGGCAGTTGCTGAATCTGGTAGAGCCGCCGCAGGCAAAAGTACAAAGCAGCCTTCACGAAAGAAAGTTGAACCTTCCTGTGCGTTTCCCGTGGCTGCTGTTAAAAGAGCAGGAGACCTTCTTTCGGAGATAGATAGGAAAAATGATGTTCCTCCTCCACGAGTGCAATTTGATGACAAAAGCCGAATGGAAAAGGCTAGAAGGCATGCAGTAGTCAATCCAACTGATAGAAACAGAGTTGAATTATTTCAGCATTTGCCTCAATATGAACATGGGACTAAGCTTTCTAATCTTGAATCAAAGTTTTTCCACCTCGGTTTAGTTCACCCTTCTGTATTTGAGTCCATATTGCGTTATACGACAGGAGATATATCAGGGAGTAATGCTCGTTGTATAGCTATGCTAAGAGCACTTCAAGATGCCGTTAGAGATTACTGCACATCTCATGAAAAGGTCCTTGTAAGGGATTTAACTACAAAAATAAACTATTATGTATCATTCTTTACTGAATGCAGACCACTTTCTATGAGCATGGGCAATGCGATTAGGTTTGTAAAGAGTCGTATTGCCCATCTGTCTTTAAATTATTCCGAGTTTGAGGCAAAAACATCCCTGTGTTCCGATATTGACCGGTTTATAAACGAAAAAATAATTCTTGCTGATAAGGTGATTGTCCGACATGCTTTTACAAAGGTTAGGGATGGGGATGTTCTTCTCACATATGGAGTGTCATGTGTTGTTGAGATGATTCTTTTATATGCCCATGAGCTGGGGAAAAAGTTCCGTGTCGTGGTGGTAGATTCACACCCAAGGCTTGAAGGTCAGGCCTTGCTTCGTAGGCTAGTGGCTAAGGGTCTGAGTTGCACGTATACTCATATAAATGCTATATCTTATATCATGCATGAGGTCACACGAGTTCTTCTGGGAGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTCAAGGGTTGGGACTTCTTGTGTTGCAATGGTGGCTCATGCATTTCGAGTTCCTAAGCTGTCCGTTGATAAACTTCAATTGCTTGCAGGTGACCCAGATGCTATTGCCAGGGTCCCTGGACGAATGGATGTCAATTATCTAGACAATTGGGCCAGTGAAGACAATTTGAGGCTTTTGAATTTGACGTATGATGCTACTCCCTCAGATTATGTCTCGGTTATTGTGACAGATTATGGCATGGTAAATTACTTCATGAACACTGCAAAATTTTGA 1479 0.4287 MIPSSRHHSVTLPEIQTIADGQVAPRTSENLNLEPGIEKRKGEKEVLKSSSKPLKEKTTKAERRAMQEVQRAAKASCKAEGSKAVAESGRAAAGKSTKQPSRKKVEPSCAFPVAAVKRAGDLLSEIDRKNDVPPPRVQFDDKSRMEKARRHAVVNPTDRNRVELFQHLPQYEHGTKLSNLESKFFHLGLVHPSVFESILRYTTGDISGSNARCIAMLRALQDAVRDYCTSHEKVLVRDLTTKINYYVSFFTECRPLSMSMGNAIRFVKSRIAHLSLNYSEFEAKTSLCSDIDRFINEKIILADKVIVRHAFTKVRDGDVLLTYGVSCVVEMILLYAHELGKKFRVVVVDSHPRLEGQALLRRLVAKGLSCTYTHINAISYIMHEVTRVLLGASAVLSNGTVYSRVGTSCVAMVAHAFRVPKLSVDKLQLLAGDPDAIARVPGRMDVNYLDNWASEDNLRLLNLTYDATPSDYVSVIVTDYGMVNYFMNTAKF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04834 492 Pfam Initiation factor 2 subunit family 206 484 IPR000649 GO:0044237
Spst3g04834 492 MobiDBLite consensus disorder prediction 126 146 - -
Spst3g04834 492 SUPERFAMILY NagB/RpiA/CoA transferase-like 189 484 IPR037171 -
Spst3g04834 492 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 34 483 - -
Spst3g04834 492 MobiDBLite consensus disorder prediction 33 69 - -
Spst3g04834 492 MobiDBLite consensus disorder prediction 19 105 - -
Spst3g04834 492 Gene3D - 300 489 IPR042529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04834 Spst-Chr3 100042566 100047374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04834 31 483 Eukaryotic Initiation Factors Gene Family AT5G38640 60.254 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04834 K03680 - gmx:100795256 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04834 3 100042566 100047374 Spst3g04834 3 100042566 100047374 ECH