Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04827 ATGGCAGAAGCAGAAGACAACTTTCAAGCCTTGCCTATGGACGAAACGAAGAACAAGAGTAAGGATAAGAAGAAGCGTGACAAAAAACGACCTCGGGATATTACTACCGAGGAGCGTCCAGAAGAAGAGGAGAATGGGAATAACATAGATAGCGATGAAGACTCCTCGATGAAGAAGAATAAGAATAAGAAGAAGACGAAGGTGGAAGGCGAAAGTGAAGTGAAAGAGAGAAAGGTGAAGAACAATGGTGGGTCTGGAATTATGAGTTCTGAGTCATTTGAATCTCTGGGATTGTCTGAACCTACTTATAAGGCCATTATGGACATGGGGTTCCACCACATGACTCAGATTCAAGCGAGAGCAATTCCACCACTTTTGATCGGAAAAGATGTTCTTGGAGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTCTTAATTCCTGCGGTGGAGCTGTTGTACAATGTTAAGTTTACACCTCGCAATGGAGCTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAACTAGAAAACTTGAAGCTGAACGCCTAGCTAAAGGGATAAATCTATTGGTAGCAACTCCTGGTCGTCTCCTAGATCATCTTCAAAACACAAAAGGATTCATATATAAAAATTTAAAGTGCCTCATGATTGATGAAGCTGACAGAATCTTAGAAGCAAATTTTGAGGAGGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAGTAGGCAAACAGCTTTATTTTCCGCTACACAAACAAAGAAGGTGGAAGATCTTGCTCGCTTGTCATTTCAGACAACTCCTGTCTATATTGATGTGGATGATGGGAGAACCAAGGTCACGAACGAAGGATTGCTTCAGGGTTATGTTGTTGTACCCTGTGCCAAGCGCTTTATTGTTCTATATTCCTTTTTGAAAAGACACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGACATTCTTAATCTCATTCAGTTGAATTGTTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTCTTTGATTTTTGCAAAGCAGAAAAGGGGATCTTGCTATGTACTGATGTTGCTGCTCGTGGACTTGATATTCCTGCTGTGGACTGGATTGTTCAGTATGATCCACCTGATGAACCGAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGAGGTGAAGGTGGAAAAGGAAATGCTTTGCTTTTCTTGATTCCTGAAGAATTGCAATTTCTCCGCTACCTAAAGGCAGCTAAGGTCCCTGTCAAAGAGTATGCATATGATGAAAAGAAGGTGGCAAATGTACGATCTCACCTGGAGAATTTGGTTGTCAACAATTTTTATTTGAACAAGATGGCGAAAGAAGCTTATAGATCATACATATTAGCTTATAATTCACATTCCATGAAAGATATATTCAATGTTCACCGTCTTGATTTTCAGGCTGTTGCTTCTTCGTTTTGTTTCTCAAACCCACCAAACGTGACACTAAACATAAACAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGCGACAACAATCCTTATGGAAAGAGAAATTCAGATGACAAGCGGCAGATTGTGAGGCACTAG 1731 0.4084 MAEAEDNFQALPMDETKNKSKDKKKRDKKRPRDITTEERPEEEENGNNIDSDEDSSMKKNKNKKKTKVEGESEVKERKVKNNGGSGIMSSESFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAERLAKGINLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIQLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVRSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDFQAVASSFCFSNPPNVTLNINSSKQRKKMRKVDGSRHGFSDNNPYGKRNSDDKRQIVRH 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04827 576 CDD SF2_C_DEAD 312 442 - -
Spst3g04827 576 MobiDBLite consensus disorder prediction 540 576 - -
Spst3g04827 576 Gene3D - 38 301 IPR027417 -
Spst3g04827 576 SMART helicmild6 351 432 IPR001650 -
Spst3g04827 576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 297 IPR014001 -
Spst3g04827 576 Pfam DEAD/DEAH box helicase 115 286 IPR011545 GO:0003676|GO:0005524
Spst3g04827 576 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 243 251 IPR000629 -
Spst3g04827 576 MobiDBLite consensus disorder prediction 1 93 - -
Spst3g04827 576 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Spst3g04827 576 MobiDBLite consensus disorder prediction 51 80 - -
Spst3g04827 576 Pfam Domain of unknown function (DUF4217) 473 533 IPR025313 -
Spst3g04827 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 300 IPR027417 -
Spst3g04827 576 SMART ultradead3 110 315 IPR014001 -
Spst3g04827 576 CDD DEADc_DDX18 102 299 IPR044773 GO:0003724|GO:0005524
Spst3g04827 576 Pfam Helicase conserved C-terminal domain 327 431 IPR001650 -
Spst3g04827 576 FunFam RNA helicase 308 538 - -
Spst3g04827 576 PANTHER RNA HELICASE 32 479 - -
Spst3g04827 576 Gene3D - 312 552 IPR027417 -
Spst3g04827 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 446 IPR027417 -
Spst3g04827 576 SMART DUF4217_3 472 535 IPR025313 -
Spst3g04827 576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 471 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04827 Spst-Chr3 99988106 99993045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04827 91 450 Eukaryotic Initiation Factors Gene Family AT3G13920 31.593 3.43e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04827 K13179 - gmx:100798885 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04827 3 99988106 99993045 Spst3g04827 3 99988106 99993045 ECH