Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04822 ATGGAACCCATGGACATCGTCGGCAAGTCAAAAGAAGATGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTACCCCCAGATGTACGTGTTGCAAGAGATGCCCAGGATCTATTGATCGAGTGTTGTGTAGAATCCAATGAAGTCTGTAACAAAGAGGATAAACGGACAATTGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTCGGTGAGTACATTGAAGAAGTTCAAGCAGCATATGAACAGCACAAGCTAGAGATCATGGACTCTATAAAGGTTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGGATGCATGGTGGAACCCAATCTTCCAAGCAGCTAGATACTGACCAGAGTTTAGATAGCTGA 444 0.4369 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVESNEVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVQAAYEQHKLEIMDSIKVGKWSNGAEMTEEEALAEQQRMFAEARARMHGGTQSSKQLDTDQSLDS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04822 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 71 IPR003958 -
Spst3g04822 147 SUPERFAMILY Histone-fold 12 133 IPR009072 GO:0046982
Spst3g04822 147 MobiDBLite consensus disorder prediction 126 147 - -
Spst3g04822 147 FunFam Negative cofactor 2 beta 6 134 - -
Spst3g04822 147 PANTHER PROTEIN DR1 HOMOLOG 1 146 IPR044255 -
Spst3g04822 147 Gene3D Histone, subunit A 4 138 IPR009072 GO:0046982
Spst3g04822 147 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04822 Spst-Chr3 99957015 99960788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04822 1 133 CCAAT-DR1 Transcription Factor Family AT5G23090 82.394 1.40e-80 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst3g04822 CBFD_NFYB_HMF 8.5e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04822 K21751 - zju:107418942 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04822 3 99957015 99960788 Spst3g04822 3 99957015 99960788 ECH