Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04816 ATGCCCATTGAAATAGACAAGTCCTATGAGAAGAGAGTCATGAAGATTCCAAAAGTAGGAAACAAGAGTGAGAAGAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCCTCACAAAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGCTTCTCAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATAAACACTCGTGAAGAAGACTGCAGCATTTTGGGTAAGAATCCTAGGACTTACCAACTTCTTAAGCGTGCAGTTATGAAGAACCATGGACTTTCATCATCTCTTTATTCCACATTCATGCCTTGGAAAAACCAGATCATGATGAGAGATGAATTTGACACCCTTGTTGAGGAAACTATCGTTTGTTCCATTCCTGAACAAGGCTCTGGCTGTTCTGGAATTTCATTTGGAAGTTCCAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCACGATGAAACCCCCTAA 564 0.4167 MPIEIDKSYEKRVMKIPKVGNKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPGIINTREEDCSILGKNPRTYQLLKRAVMKNHGLSSSLYSTFMPWKNQIMMRDEFDTLVEETIVCSIPEQGSGCSGISFGSSKVYSSVVVAPSFSASSHDETP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04816 187 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Spst3g04816 187 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Spst3g04816 187 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Spst3g04816 187 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677
Spst3g04816 187 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Spst3g04816 187 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Spst3g04816 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 108 - -
Spst3g04816 187 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Spst3g04816 187 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Spst3g04816 187 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04816 Spst-Chr3 99884503 99885066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04816 20 84 AP2-EREBP Transcription Factor Family AT5G19790 70.769 1.40e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g04816 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04816 - K09286 pvu:PHAVU_003G180000g 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04816 3 99884503 99885066 Spst3g04816 3 99884503 99885066 ECH