Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04799 ATGGCAGACGTAACAACCTACCTCCGCCACCGCCACCACCACGACGATGACCAAATCCTAATTCCTTTCCCTTATTGGGATCTAGACTTCGATTTCGACCCCGAATTTCCCCCCAACCCTTTCTCCCTCACTGACCGCGAAAACCAGGTCAATTTCGTCATGGATCTTTTCCACCAGCGCGTGGAGCAGTCGCAAATCACCGATCCCCTCTCTAACGACGCCGTTTTTGGCGTCATCGACGCCCTCAACCTTGGCTTCCCCGCCGACGACGTCTTCTTCGTCGGACGCCGGCTATCCGTCGGATCCGACTCCGAAGAATCGCTCTCCCGTTCCGGAAACGTCGACCTCGGGATCTGCACTCACTCTGAGGAAGAGTACAACGTGAACGACGACGTTTCGAGTATTCCTCTCTGCTTGAACGCGCTGCGATTGGAAGACAACAGAGACAGTTACGAGGATTTCGAGTGGGAGGAAGTGGTCGACGAGAGAGAAGTTCTGAGCATGCTCGACGACACCTCCATTTCCATCTCTGTCGGAATCGAAGAGGAAGCGGAGGGGGAAGGAGAATTGGAATCGGGGGCCAACAATTTGGAGTGGCAGGTTCTGTTGAACGCCAGCAATTTGGACGGAACGAATTCCGAGCCTTTCTTTGATGACAACGAGGATTTCGTGTACGCCGCTGAGTACGAGATGTTCGGTCAATTCAACGAGGACGCCTTCGCCGGGAAGCCTCCGGCGTCCGTCTCTGCCGTGAGGAACCTTCCGGCTGTGGTCGTGAGCACTGCTGACGTGGCAAACGAAAACATGGTTTGCGCGGTTTGTAAGGAGGAGTTTGGCGTTGGGGAAAGAGTGAAGCTGTTGCCGTGTTCGCATCGTTACCATGGGGACTGCATTGTGCCGTGGTTGGGGATAAGGAACACGTGTCCCGTTTGTCGCTACGAGTTTCCCACTGATGATGCTGATTATGAGCGGAGGAAGGCACAGAGATCTGTTGTGTAA 999 0.5455 MADVTTYLRHRHHHDDDQILIPFPYWDLDFDFDPEFPPNPFSLTDRENQVNFVMDLFHQRVEQSQITDPLSNDAVFGVIDALNLGFPADDVFFVGRRLSVGSDSEESLSRSGNVDLGICTHSEEEYNVNDDVSSIPLCLNALRLEDNRDSYEDFEWEEVVDEREVLSMLDDTSISISVGIEEEAEGEGELESGANNLEWQVLLNASNLDGTNSEPFFDDNEDFVYAAEYEMFGQFNEDAFAGKPPASVSAVRNLPAVVVSTADVANENMVCAVCKEEFGVGERVKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAQRSVV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04799 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 181 316 - -
Spst3g04799 332 Pfam Ring finger domain 271 312 IPR001841 -
Spst3g04799 332 SUPERFAMILY RING/U-box 254 318 - -
Spst3g04799 332 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
Spst3g04799 332 SMART ring_2 271 311 IPR001841 -
Spst3g04799 332 FunFam E3 ubiquitin-protein ligase RING1-like 233 318 - -
Spst3g04799 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 318 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04799 Spst-Chr3 99691141 99692139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04799 7 75 C3H Transcription Factor Family AT5G60820 37.778 1.11e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04799 - - gmx:100794303 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04799 3 99691141 99692139 Spst3g04799 3 99691141 99692139 ECH