Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04796 ATGGAGTCGCCGTCTACGTCGTTGGGTTCTCCAAAAAAGAGGCTGAGATCCAAAGTAGAGGAGGATGAGGACGAGGAAGAGAGCGTCTGTTGCGGGATTTGCTACGCGGAGGGAGGGGTTTCGGTCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTCTGCATCATGGAATGGGCTAAGCACGAATCTCGATGCCCAATTTGTCGCCAGAGGTTCTCCAACGTTCGCAGGCTCCCCATGCACGGCGTCTTTTCCTCCTCTCGGGACGTTAAGGTCCCTCATCGTGACCAGGAATCAGGGAAATTTAAGGCGGTCCACAACAAAGGCAATTGCTACTGCCTTATACATCGCAACAGTCTGCCGACTACCTCCAGCTGCCGCCAGTTGTCGCGGGTCACCATTAGTCGCTGTCGGGCCCTGCCACTACCATCGACGTTGTTTGCCGTCACTGTCATCTGCTGGCGCCGCTGCCCTGCTGTTTTATTGGGCTTTGGCGGTATTTATCATGCACTTCTGGGACCTGAGACTCTCGAAGAATCTTTTCCGTTCTTTGGTTATGCTTATCATCCTCATGGAAATGTGGCAATTGGTCTTGTTGATTCTTATTATGCTGAAACCAAATGCGGTGTTTGTCGTGCTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGTTATACTGTTCCGGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCCCGGGAGACCAATGCCAACGAAGAATCAGACCAACAAAATGTGCCAGAGGCTGAGCCAAGTGAACCCGTTGATATCTATGATATTGTGAGGGAAACAGGCAGTCGGGTGGTTATAAGACCAAGGACATCTCCTTTCCAACAGAACCTGTCATCTCCTTCTGCTATACCTTTATCAGATAGGTTAAGTAGATTAAAAGGAAAAAGTCCTGCCACAGGTGTCCATGATATGCAGCGTAGTCTACAGGCATTTCGTGAAAACTGGAATGCTTTGAGGAGTGGCTCATTACAGTTCCATCGTAATGCGAATCAACCTAGAAGCACGGTTAGTCAAAAACAAGATTCTAGATCCTTCTCACATGGAAAATTAGATGATTCACATTCTAGGGCTTCCACAAGCCTGCAACAATCCACTGTCCAAGGTGGTCCTACTAACAAAACGTTGAATGAGAGAGTCTTTAAAGATGCTGAGAAGGCTTGGAAAATGGTGGACAGGGCAAAGAGGATGCAACTAACTAATCAAAGAACTAGCAACCTTCCGCAGGGAGTAGATAAACCTTCATGCAGTGGAGCTAGAAATACATCAATTACACATTGTAATTTCCCATCACTGAAAGATCAATGTTGCAAAGCATTAGATTTAAGGAACAGTAAGAAAGAGAAGGAGTGTGAGTATTCTAGGCTCGTCCAGAATTTGGCAAATTGCCCGGATGTAAAGCTCGAAGAGAAAAAGCAAAGTAGGGCTAGATGTGAGGATATGATACACCGTGTAAGGGACTATACTAATTCAGAAGGATGTTGTGAATGTCCATTTTCCAGAAAGGTCGGTACTAATATCCAGGGTGGTGTTCCCAGTCGTGAAGAAGAGAGAAACGCTTGCAAATTAACTTCAGCAGATTTAGCTTCCACGCATGGCAAGTTTGTTAATGTGCGCTCCTCTAGTAGAGATGTGGTTCTTGTTAATGAAGAAAAGAGATTAGCTAGAAGTTGTGAGGATGGAAGCACAAGAAAAACTGACGATGCAAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTAACAAGAGATAAAAAATTAGGTTTTGAGACCTTCAAGGCAGTTGCAAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCTGAGCCGCAAAAGTGTAGTACATCCTCCTCTAGGTCAGTATGCAACCATTCCGACGATACTCCTCAGTTTCAGAAGTCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAATGTTGTCAGTTCCACCATAATGGAGAAAGTGGGTTGCGCTTGA 2091 0.4553 MESPSTSLGSPKKRLRSKVEEDEDEEESVCCGICYAEGGVSVAGEIDCCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQESGKFKAVHNKGNCYCLIHRNSLPTTSSCRQLSRVTISRCRALPLPSTLFAVTVICWRRCPAVLLGFGGIYHALLGPETLEESFPFFGYAYHPHGNVAIGLVDSYYAETKCGVCRAGTDEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCAISRETNANEESDQQNVPEAEPSEPVDIYDIVRETGSRVVIRPRTSPFQQNLSSPSAIPLSDRLSRLKGKSPATGVHDMQRSLQAFRENWNALRSGSLQFHRNANQPRSTVSQKQDSRSFSHGKLDDSHSRASTSLQQSTVQGGPTNKTLNERVFKDAEKAWKMVDRAKRMQLTNQRTSNLPQGVDKPSCSGARNTSITHCNFPSLKDQCCKALDLRNSKKEKECEYSRLVQNLANCPDVKLEEKKQSRARCEDMIHRVRDYTNSEGCCECPFSRKVGTNIQGGVPSREEERNACKLTSADLASTHGKFVNVRSSSRDVVLVNEEKRLARSCEDGSTRKTDDAKTEIQSLVKLNLKLLTRDKKLGFETFKAVARQATHTILAACSSEPQKCSTSSSRSVCNHSDDTPQFQKSTLMPNCCRQCFYAFVNNVVSSTIMEKVGCA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04796 696 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Spst3g04796 696 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Spst3g04796 696 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g04796 696 Pfam Ring finger domain 31 72 IPR001841 -
Spst3g04796 696 SUPERFAMILY FYVE/PHD zinc finger 203 256 IPR011011 -
Spst3g04796 696 MobiDBLite consensus disorder prediction 354 372 - -
Spst3g04796 696 PANTHER F18C1.6 PROTEIN 191 693 - -
Spst3g04796 696 MobiDBLite consensus disorder prediction 384 403 - -
Spst3g04796 696 SUPERFAMILY RING/U-box 18 79 - -
Spst3g04796 696 SMART PHD_3 210 255 IPR001965 -
Spst3g04796 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 277 IPR013083 -
Spst3g04796 696 MobiDBLite consensus disorder prediction 299 329 - -
Spst3g04796 696 MobiDBLite consensus disorder prediction 299 314 - -
Spst3g04796 696 SMART ring_2 31 71 IPR001841 -
Spst3g04796 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 96 IPR013083 -
Spst3g04796 696 MobiDBLite consensus disorder prediction 354 405 - -
Spst3g04796 696 ProSiteProfiles Zinc finger PHD-type profile. 208 257 IPR019787 -
Spst3g04796 696 Pfam PHD-finger 211 255 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04796 Spst-Chr3 99674998 99684250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04796 206 258 C2H2 Transcription Factor Family AT3G01460 38.889 3.07e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst3g04796 PHD 1.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04796 - - gmx:100808541 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04796 3 99674998 99684250 Spst3g04796 3 99674998 99684250 ECH