Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04794 ATGGAGAGTGGAGGTGCGGTGGTGCGGCACGATGAAAAAGTTGGAGAGAGGGAATGGAGCCGGGGTTATGAAATGAAGATCCGCTCACGCCCAACCACCACCACCACCACCACCACCATCACCGTCGATCTAGATCTCCTTCGGCCGATTTTTCCAGATTTGCTCGCCGCCACCACCGTCATGACTGCCAACGGAGGGAGTTGTCTGAAGACCCATGATTTTCTGCAGCCACTAGAGCGGCTAGAAACGAAGGGGAGTGCGAAGGAAGAAGCGACGGATGAAATATCATGGGTGGTTGAGAAGGCAGGACCTTCGGTTGAGCATCTCTTACCTGGGGGAATTGGGACTTACAGCATTAGCCACATTTCATATGTTAATAATAACAGTAACAATAATAATCAAAGGCTTCCGAAAGCAGAGACGTCCCTTTTCGTGCGTCAAGCAAATAGTACGGACAGGAACGATGAGAACTCCAACTGCAGTTCGTATACTACTTCAAGTGGTTTCACGCTGTGGGAAGACTCATCGGGGAAGAGGGGCAAAACAGGAAAGGAGAATAATTCGGGCGACAAACCCTCTCTTGGAGAGTGTGCGGCGACAAAGCTAGGGCAGTGGACATCAGCGGAGCGGACGTCGCAGTCGTTTTGTACCAATCGTCACGGCAGCCTCAGCTCTCGCTCTTCATCGCAGACAACTGGGCAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCCCAGGATGAAGTGCTAGAGAACGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATACCCAAAGAGAACTGAGAGTGAAAGTAGATGGTAAGAATACTGACCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATCAATGACAGGCATGTATTACCTGGCAATCCAGTCTTGAAATTCCAAATGTTAAGAGAGCTTATTCCGCACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTACATTCATTTTTTACAAGAGAAGGTTCACAAGTATGAAGGTTCATTTCAAGGGTGGAATAACGAGCCAGAGAAATTGATGCCATGGAGAAACAATGACAAGCCAGCTGAGAACTTTCAACCTCGTGGCACCGATAATGGGTCAAGTCCATCTCCAGCACTGCTCTTTGCTTCAAAGATTGAGGAGAAAAATATTAGCATCTCCCCAACAATTCCTGTGAGTACCCATAATGTAGAATCTGGCTTGAGTACGGCAACTACCTCCAAGACAATGGACCATCCGGCTGGGATAATGAACAAGGCTTTTCCAATTCCTATTTCTTCACAGCTAAATTTCTTCTCTCCAAATCAAATGGGTGGTCCAGGTGGAGTGGTGTCTCAGCTCACGCATAGAACGGCTTCTGATGCTGAGAACAAATATCAACCTTCAGTGGAGTGTCAGACTGTTGCTGCTACCAATGAAAAGCTAAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGCATACGCTTACACATGCACTGCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAACTGTACCAGTGTCAGTGTGTGATGCTAAGGATGGTGAAGTACCTTCTAACAACCAAAAGATGACGCGCTCTAGAGTTTCCAGCTCTGGGAAGTCTGACCAAGCCATTAAGAAGCTAAAGACCTGCAGAAGTTAA 1803 0.462 MESGGAVVRHDEKVGEREWSRGYEMKIRSRPTTTTTTTTITVDLDLLRPIFPDLLAATTVMTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSISHISYVNNNSNNNNQRLPKAETSLFVRQANSTDRNDENSNCSSYTTSSGFTLWEDSSGKRGKTGKENNSGDKPSLGECAATKLGQWTSAERTSQSFCTNRHGSLSSRSSSQTTGQKNQSFIEMMKSARDSAQDEVLENEETFFLKKEPSNTQRELRVKVDGKNTDQKPNTPRSKHSATEQRRRSKINDRHVLPGNPVLKFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNNDKPAENFQPRGTDNGSSPSPALLFASKIEEKNISISPTIPVSTHNVESGLSTATTSKTMDHPAGIMNKAFPIPISSQLNFFSPNQMGGPGGVVSQLTHRTASDAENKYQPSVECQTVAATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTVPVSVCDAKDGEVPSNNQKMTRSRVSSSGKSDQAIKKLKTCRS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04794 600 CDD bHLH_AtBIM_like 288 374 - -
Spst3g04794 600 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 64 597 IPR044295 GO:0003700|GO:0006351|GO:0046983
Spst3g04794 600 MobiDBLite consensus disorder prediction 171 196 - -
Spst3g04794 600 MobiDBLite consensus disorder prediction 565 600 - -
Spst3g04794 600 MobiDBLite consensus disorder prediction 211 236 - -
Spst3g04794 600 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 349 IPR011598 GO:0046983
Spst3g04794 600 MobiDBLite consensus disorder prediction 260 308 - -
Spst3g04794 600 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 370 IPR036638 GO:0046983
Spst3g04794 600 SMART finulus 295 355 IPR011598 GO:0046983
Spst3g04794 600 MobiDBLite consensus disorder prediction 260 311 - -
Spst3g04794 600 MobiDBLite consensus disorder prediction 571 591 - -
Spst3g04794 600 Gene3D - 287 370 IPR036638 GO:0046983
Spst3g04794 600 Pfam Helix-loop-helix DNA-binding domain 291 350 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04794 Spst-Chr3 99645617 99653138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04794 66 597 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.766 1.34e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g04794 HLH 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04794 - - gmx:100808016 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04794 3 99645617 99653138 Spst3g04794 3 99645617 99653138 ECH