Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04784 ATGGGGAGGGGAAAAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGGTTTACTGAAGAAAGCCCGGGAGATCTCTGTGCTTTGCGATGCTGATGTGGCTCTCATAGTCTTCTCCACTAAAGGCAAGCTTTTCGACTACTCCACCCAACCTTCTTTGGAGAGAACTCTAGAACGGTATGAGAGGAATTCTTATGCGGAGAGGCAAGTCGGTGAAGGAGATCAAGCATCAAATAAAAACTGGGTTATAGAACACGAAAAACTCGAGGCTAGGTTGGAGGTGCTACAGCGATATCAAAGGAATTTTATGGGAGAAGAGCTTGATAGCTTAAATCTCAGAGGTCTCCAGAGTTTGGAACAACAACTTGATTCCGCTCTCAAGCACATTAGATCACGAAAGAACCAAACCATGCATGAATCTATTTCAGAGCTTCAGAAAAAGGATAGGGAACTCCGGGAACATAACAACTTGCTCGCCAAGAAGATAAAGGAAAAGAAGGCACTGGCCTCTCAAGAGCAAGAGGGGTTGACTTCTGTCGTTATAACTCAACCATTGGAGTCCCTAAATATTGGGTTAGTATCTTCGCGTTCATAA 624 0.4423 MGRGKVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLFDYSTQPSLERTLERYERNSYAERQVGEGDQASNKNWVIEHEKLEARLEVLQRYQRNFMGEELDSLNLRGLQSLEQQLDSALKHIRSRKNQTMHESISELQKKDRELREHNNLLAKKIKEKKALASQEQEGLTSVVITQPLESLNIGLVSSRS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04784 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g04784 207 Coils Coil 125 145 - -
Spst3g04784 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst3g04784 207 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Spst3g04784 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst3g04784 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Spst3g04784 207 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g04784 207 Coils Coil 154 181 - -
Spst3g04784 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g04784 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g04784 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g04784 207 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Spst3g04784 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g04784 207 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g04784 207 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Spst3g04784 207 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04784 Spst-Chr3 99564826 99568896 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04784 1 207 MADS-box Gene Family AT1G26310 54.630 1.92e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst3g04784 K-box 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04784 K09264 K09260 gmx:100798351 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04784 3 99564826 99568896 Spst9g02478 9 58525352 58526859 PCT