Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04782 ATGAAAACACTGGAGAAGTACCAGAAGTACAGTTACAGTGCACTGGAGACCACCAGACCAACTAACGACATCCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGTTCACAAAGGAATCTACTCGGGGAAGATCTTGCCCAAATGAATACAACTGATCTCGAGCAGCTTGAGAATCAACTAGAGGCAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACGAACGGGGTGTAACCTTGGCTTTTACAAACTCGATGCAGGAAACATTGCTTGTTGAAACTAATAATGTGTTAAGGAGTAAGGTAACAACTATTTCCAACTCAAATGCAATTTTCTCATGA 390 0.4103 MKTLEKYQKYSYSALETTRPTNDIQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEAALKNIRSTKTQFMLDQLADLHERGVTLAFTNSMQETLLVETNNVLRSKVTTISNSNAIFS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04782 129 ProSiteProfiles K-box domain profile. 23 124 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g04782 129 Coils Coil 53 80 - -
Spst3g04782 129 Pfam K-box region 24 118 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04782 Spst-Chr3 99559566 99560373 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04782 1 106 MADS-box Gene Family AT3G02310 53.153 8.60e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04782 K09264 K09260 gmx:100804810 180.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04782 3 99559566 99560373 Spst9g02478 9 58525352 58526859 ECH
Spst1g01467 1 18367206 18374702 Spst3g04782 3 99559566 99560373 ECH
Spst3g04782 3 99559566 99560373 Spst3g04782 3 99559566 99560373 ECH