Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04781 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAAGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAGACTCAGAGGAAGAGAAACAGGAAAAGGGCGTCCTTTAGCTTCTAAGGCTGTGAATCTACGTCTATCCTCAAAACCGTTGTGGAATAGCTGGTTTGATCTACAAGACTAA 294 0.4558 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSRLRGRETGKGRPLASKAVNLRLSSKPLWNSWFDLQD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04781 97 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Spst3g04781 97 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst3g04781 97 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g04781 97 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Spst3g04781 97 FunFam MADS-box transcription factor MADS-MC 13 78 - -
Spst3g04781 97 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g04781 97 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g04781 97 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g04781 97 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst3g04781 97 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g04781 97 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Spst3g04781 97 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04781 Spst-Chr3 99556605 99557760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04781 1 94 MADS-box Gene Family AT2G03710 65.957 4.99e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g04781 SRF-TF 4.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04781 - K09264 twl:120016964 121.709