Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04779 ATGGAATCTTGGAGCTATGTCCCTGAAGAAAAGGAGTGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGAACAAAAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACACCATTGAAAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGGAAACACTTGTCCGATGATCTAATTGCCAGTGTTCCAAGCAGAAAGCTGGATGCTAGTAGACAACACCAACATCAACACCAACACCAACACAGTGACAGAATCACTGGCACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAATTTCCAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCACTGATCCGGGGTTTTCCAAAATTTTGTCGTCTTCTGAGTCATCAACGCCTCCTAAGAGAGTGAGAGCTTCAGGGATTCACTCTCAGACTGCATATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGTAAAGACTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCCACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGTTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGAACCATGCTAACATCATCTTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGCTATGAGTGGCTTCTGGAGACCTATCAAAGCAGAACACGGGGCTGGTTTTAGGAATCTTTCTTCTGTGCCTGTATCCAATGGGAATCCTCAGTCAAGATCTTTATTTCCATCATATAACGGAAAACAATTTCCTTTTCTTCATGAAAATGGTGCAACATCCACCACAGGAAGCATCTTCTATGAGAGCACTAACCACTATCCACCTGCCCTCGGGGCACAAAATTCTGGGTTAAGACCACTATTCCAGGATACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCCCACTCCTTGGTTATTCCAAGCAGTCATGGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTATTAATATCAGACAATAATGATATTGTAAACTTTGATATGGCAGATGGTATCTTCCATGGTTCAGAATTCATGAATGTGAAGGATCGACTTTCCTGCGAAGATAGTGCAACCATCGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCTTTGCAGGTGAAGCAAGAGAATGATTCTTCCTGCACTCTGCGGATTACATAA 1668 0.4454 MESWSYVPEEKECVSNEALSPPNTLGRNKNSFLGWELKTPCGFSNDMLGLGQHTIENQGFEELGFPEMLGKHLSDDLIASVPSRKLDASRQHQHQHQHQHSDRITGTVVDAPSGFSQRGDSISKLSNSNSLIDLKLGRFADHGDATDPGFSKILSSSESSTPPKRVRASGIHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGTMLTSSFIRPEMLPSGVMCSEKYAMSGFWRPIKAEHGAGFRNLSSVPVSNGNPQSRSLFPSYNGKQFPFLHENGATSTTGSIFYESTNHYPPALGAQNSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHGHHYNMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDNNDIVNFDMADGIFHGSEFMNVKDRLSCEDSATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04779 555 MobiDBLite consensus disorder prediction 87 103 - -
Spst3g04779 555 Pfam SBP domain 178 251 IPR004333 GO:0003677
Spst3g04779 555 Coils Coil 523 543 - -
Spst3g04779 555 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g04779 555 ProSiteProfiles Zinc finger SBP-type profile. 175 252 IPR004333 GO:0003677
Spst3g04779 555 MobiDBLite consensus disorder prediction 85 105 - -
Spst3g04779 555 SUPERFAMILY SBT domain 176 255 IPR036893 GO:0003677|GO:0005634
Spst3g04779 555 FunFam Squamosa promoter-binding-like protein 14 169 239 - -
Spst3g04779 555 Gene3D - 169 239 IPR036893 GO:0003677|GO:0005634
Spst3g04779 555 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 103 541 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04779 Spst-Chr3 99524343 99527652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04779 132 293 SBP-box Gene Family AT1G69170 57.407 1.21e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst3g04779 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04779 - - gmx:100817547 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04779 3 99524343 99527652 Spst3g04779 3 99524343 99527652 ECH