Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04778 ATGTCGGAAGCCTATGATGCACTTGATCCAACTGCCAATATTACAATCAAATGGGATGTCATAAGCTGGACTCCAGACGGCTATATTGCTGTTGTCACAATGTACAACTTTCAACAGTATCGGCATATTCAGACTCCTGGATGGATACTAGGGTGGACATGGGCAAAAAAGGAAGTAATTTGGAATGTAATGGGAGGCCAAACCACAGAACAAGGGGACTGTTCGAGGTTCAAAGGGAACATCCCTCATTGTTGTAAGAAGGATCCAACCGTAGTGGACTTACTGCCTGGAACTCCTTACAACCAGCAGATTGCTAATTGTTGCACAGGGGGAGTCCTAACTTCATGGGCTCAGGACCCTGAACATGCAGTAAGTTCATTTCAACTCAGTGTTGGTTCTGCAGGAACCACTAACAAAACGGTCAAACTGCCAAAAAATTTTACCCTGAAAGCACCTGGGCCTGGTTATACTTGTGGCCCTGCAAAGATTGTGAAACCTACTAAATTTATTACCAATGACAAGAGGAGAACCACTCAGGCATTGATGACCTGGAATGTTACCTGCACGTATTCTCAATTCCTAGCTCAGAAGACCCCAACATGCTGTGTTTCTCTTTCATCCTTCTACAACAATACAATAGTAAACTGCCCTACCTGCACCTGTGGTTGCCAAAACAAAACAGAACCTAGCAGCTGTGTAGATCCTAATTCCCCGCATTTAGCTTCAGTGGTATCACCACCAGGCAAAGCTATAAATACACCTCTGGTCCGGTGCACCAATCACATGTGTCCTATACGAGTGCATTGGCACGTGAAGCTTCAATATAAAGAGTACTGGAGGATAAAGATCACGATCACAAATTTCAACTACAGAGTGAACTATTCACAATGGAACCTTGTTGTGCAGCACCCAAACTTTGACAATGTAACGCAGGTTTTCAGCTTTAATTACAAGCCACTAACACCTTATGTGGGCTTAAACGATACTGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTACTTACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGCTCTTATTCCGAAAGGACAAATCAACCTTCACATTTGATAAGGGATGGGCTTTCCCGCGAAGAATTTATTTCAATGGAGATAACTGTGTAATGCCACCTCCTGACGCCTATCCATGGCTTCCAAATGCAAGTTCAAAGCTAGTTTTCTCTTTGCTGAGTACAGTCTTCGGCACTATAGCTTGTGTGGTGATGTTATTGAGTTAA 1266 0.4368 MSEAYDALDPTANITIKWDVISWTPDGYIAVVTMYNFQQYRHIQTPGWILGWTWAKKEVIWNVMGGQTTEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCTGGVLTSWAQDPEHAVSSFQLSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTKFITNDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCTCGCQNKTEPSSCVDPNSPHLASVVSPPGKAINTPLVRCTNHMCPIRVHWHVKLQYKEYWRIKITITNFNYRVNYSQWNLVVQHPNFDNVTQVFSFNYKPLTPYVGLNDTGMLWGVKFYNDLLTSAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVFSLLSTVFGTIACVVMLLS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04778 421 PIRSF COBRA 1 421 IPR006918 GO:0010215|GO:0016020
Spst3g04778 421 Pfam COBRA-like protein 28 191 IPR006918 GO:0010215|GO:0016020
Spst3g04778 421 PANTHER PROTEIN COBRA 2 408 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04778 Spst-Chr3 99508751 99511513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04778 2 420 COBRA Gene Family AT3G02210 75.238 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04778 - - vun:114177145 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04778 3 99508751 99511513 Spst3g04778 3 99508751 99511513 ECH
Spst3g04778 3 99508751 99511513 Spst9g02474 9 58372386 58376985 PCT