Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04776 ATGAACGGATTAAGAAATGAACGAGCCCCTCTCTTGCAGTCTGAGCGTGGGGTAAAAACCTGCGGAAGGGTTGGGGCAGTTGGACATATTTCTGCACGAGTTTATCGATGTGGTCCTCCATTAATTTTTAAAGCTATACAGGGAGAAGGAAAGAGGGATGGTGACTCGGAAGGGCCAGTCTCAGACCTTGAACATGGTGACGCAGTGCCGGCGGCAAATGTGGGATTCTGTCGAGTGTTTTCACTTGCAAAACCTGAAGCTGGAAAGTTAGTGATCGGTACTGTGGCTCTTTTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGCAGATAATTGACATTGTCTCAAGGGATATCCGAACTCCAGAGGAGAAAGATGAAGCTTTGGATGCTGTTAAGAACACCATACTAGAAATCTTTCTGATCGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTTAGAAAGAATTTGTTCAGTCACCTTGTTAGCCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAGCTTTTGAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACCGCATTTATTGGTCTGAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTAGCTTTGGCTGTTGTACCTCTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGAGAACTTTCTCATAAAACTCAAGCTGCTGCTGCAGTTGCTTCATCAATTGCCGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACACGCTACTCAGAGAAAGTTGATGAAACACTTAATCTTGGACTTAAACAAGCAAAAGTTGTTGGACTCTTTTCTGGAGGCCTGAATGCTGCATCTACGCTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATTAAGGGTTCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGACTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTTTTTCAACTTTTGGATCGTACATCATCCATGCCCAAGTCAGGAAGTAAATGTCCACTGGGTGATCAAGACGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCAGTGCTCAAGGGCATTACATTGAAACTGCATCCAGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGGCGTGGAGAGAGTACAATTGCGAACTTGATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTACTGAACGGGGTTCCTTTGGTAGAAATATCGCACAAGCATTTACACAGAAAGATAAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAAGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACGCTGTTGATTTAGAAAATGCTTCTAAAATGGCCAATGCCCATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGAACCCAAAAATTCTCCTCTTAGATGAAGCTACCAGTGCCCTAGATGCTGAAAGTGAATACCTAGTACAGGTGAGTTCACATATTATTTTGGAGGAATTCTTTTTACGGTTTCGTGCACATATAAACTTGTTTTTGCTCTTGCACGGTATACTAATGGTAATGGATATGGTCCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACCGTTGCAGTTATATCTGATGGACAAATAGTTGAGAGTGGCACCCATGATGCGCTTCTCAGCAAGAATGACTTCAGTTCAAAATGCAAGGCTTGGTTCGCAAACTGGCGGAACACCACCACCCCCATCGTCACGCCAACTCTCACCGTATCTTCCACACCTTCTCTGTTCCCAAACTTTCACGACCTCAACTGCATCTACGCAACCACATTCCCTCTTCCTTCCTCACTCACCCACCTCATCACTTTCACTCATGCCGCTCCATTTCAACCAAACTTCGCGCCTTTCTCTCCCAACCAACGATCTCGCACCGCCTCGCCCTCAACTCTCTCCTCGGAGATCGCGCCAGAAGCCTCCTGCTAG 2340 0.4393 MNGLRNERAPLLQSERGVKTCGRVGAVGHISARVYRCGPPLIFKAIQGEGKRDGDSEGPVSDLEHGDAVPAANVGFCRVFSLAKPEAGKLVIGTVALLIAATSSILVQKFGGQIIDIVSRDIRTPEEKDEALDAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVSQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPLLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDFEITRYSEKVDETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGSKCPLGDQDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGSKVALVGPSGGGKRRGESTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDAVDLENASKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQVSSHIILEEFFLRFRAHINLFLLLHGILMVMDMVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVISDGQIVESGTHDALLSKNDFSSKCKAWFANWRNTTTPIVTPTLTVSSTPSLFPNFHDLNCIYATTFPLPSSLTHLITFTHAAPFQPNFAPFSPNQRSRTASPSTLSSEIAPEASC 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04776 779 Gene3D - 409 693 IPR027417 -
Spst3g04776 779 FunFam ABC transporter B family member 25 142 412 - -
Spst3g04776 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 684 IPR027417 -
Spst3g04776 779 MobiDBLite consensus disorder prediction 753 779 - -
Spst3g04776 779 Pfam ABC transporter 433 587 IPR003439 GO:0005524
Spst3g04776 779 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 415 691 IPR003439 GO:0005524
Spst3g04776 779 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 76 683 IPR039421 -
Spst3g04776 779 Pfam ABC transporter transmembrane region 90 363 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g04776 779 SMART AAA_5 442 675 IPR003593 GO:0016887
Spst3g04776 779 CDD ABC_6TM_AtABCB27_like 93 389 - -
Spst3g04776 779 SUPERFAMILY ABC transporter transmembrane region 78 394 IPR036640 GO:0005524|GO:0016020
Spst3g04776 779 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 91 381 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g04776 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 606 IPR027417 -
Spst3g04776 779 ProSitePatterns ABC transporters family signature. 559 573 IPR017871 GO:0005524|GO:0016887
Spst3g04776 779 FunFam ABC transporter B family member 25 413 616 - -
Spst3g04776 779 Gene3D ABC transporter type 1, transmembrane domain 67 395 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04776 Spst-Chr3 99487931 99495595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04776 92 683 Calmodulin-binding Proteins AT2G36910 34.615 5.56e-89 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04776 - - var:108320153 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04776 3 99487931 99495595 Spst3g04776 3 99487931 99495595 ECH