Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04770 ATGAATAGTTCAAGCAAAGTTCACCAAGCCAATCAACAGGGTGAGAACATTAAAATTGAGAAGCTCTCAAAGGCACCTTCCGTCTCAAGATCATGGTCAGCATTCAGAAATCCAAGAATTGTTCGAGTCTCGCGGTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACTATTAGGGGACTGAGGGACAGAAGAATTAGACTGTCTGTACCTACAGCAGTTCAGTTATATGATCTTCAAGACAAGCTAGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTCACCAAATCTGATATTGATAAGCTTCCACCACTTCAATTTCCTTACTGTTTTGCTCAGTTTCACCAACAAACTCCACTGTTAGGTACCTCTCAGTTTTCTCTTGGAAGCTTGTACGATGGTGCTAGTTCCGCCTATGTAAAGGATGGGGGAAATCAAAATATCATGGCCAAGTCGACAAAGTATTGGGATATAGATTCACAAAACAGTAAGGAGTTAGCTGAAAGTGTGTCATCCTCCCAAAAGGGCAAGTGCTGGATCAAAACAAATGAAGAAGCTGGTGGTAGTACTCAAAGTAGAGAAGATCCTTCAGCTCATCATAAGCTCTTCCCCCTTGGGATTAATAACTCTTATTTACCTGATTTGCTAAACAATGCCATGACACATAACTCCTATCACCATTCTGAGCCTTCAAGTCTATCTTTATCCCATCTTGGAAGCCATGGACTATTTCCTTCCCATCCAAGCAGTGGCAGCGGTATGCAATTCTCATCTTCTAATTTCTCTGGAGCATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACATCATCTGCTTTTTACTCAGTGGAAAGTGATCCAAGACAATCCAACAATGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTTATCCAATCTCTTCATTCTACCAGTTCACCTCTTAGACGCCTCCCAACATCACTAAGTTCCAAGCTTCTTGACTCAGATAATGATGATCGCAGCCAACAAGATAAGGGTAGTATTCGTTCTTAA 1065 0.4216 MNSSSKVHQANQQGENIKIEKLSKAPSVSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPYCFAQFHQQTPLLGTSQFSLGSLYDGASSAYVKDGGNQNIMAKSTKYWDIDSQNSKELAESVSSSQKGKCWIKTNEEAGGSTQSREDPSAHHKLFPLGINNSYLPDLLNNAMTHNSYHHSEPSSLSLSHLGSHGLFPSHPSSGSGMQFSSSNFSGASGPQLLFCPPSATSSAFYSVESDPRQSNNVQIFSSSSQVMMPHPLIQSLHSTSSPLRRLPTSLSSKLLDSDNDDRSQQDKGSIRS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04770 354 MobiDBLite consensus disorder prediction 319 354 - -
Spst3g04770 354 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g04770 354 Pfam TCP family transcription factor 49 179 IPR017887 -
Spst3g04770 354 MobiDBLite consensus disorder prediction 1 18 - -
Spst3g04770 354 MobiDBLite consensus disorder prediction 319 336 - -
Spst3g04770 354 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Spst3g04770 354 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 340 IPR005333 GO:0003700
Spst3g04770 354 MobiDBLite consensus disorder prediction 337 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04770 Spst-Chr3 99453039 99454103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04770 33 210 TCP Transcription Factor Family AT5G60970 47.917 7.74e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst3g04770 TCP 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04770 - - gmx:102665855 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04770 3 99453039 99454103 Spst9g02466 9 58232107 58233225 PCT