Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04760 ATGGCTTTCTTTGGTAGAATTGGGAATTTGTTAAGACAGACAGCCAGCAGACAGGTTAGTTCAGAGTTGCGTTCATCCCCGTCATTTTTTCAGGCTATACGCTGCCTGTCTTCTGCTCCAAGTACAAAGCTGTTTATTGGAGGTGTTGCTTATACCACTGATGAGCAAAGTTTGAGGGAAGCCTTTTCAAAATACGGTGAAGTTATTGATGCAAGGATAATTATGGATCGTGAAACCGGTAGATCCAGGGGGTTTGGATTTGTTACATACACTTCTGTTGAGGAGGCATCGAGTGCCATTCAGGCTTTGGACGGTCAGGACCTTCATGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGACCTCGTGGTTCATTTGGTGGTGGTGGTGGTTATGGTGGTTCATATGGTGGCGGTGGTTATGGAGGTGCTTACGGTGGCTCTGCATATGGTGGTGGAGGTGGTGGTGGCTATGGTGGAAATGTTTCCAGTGGTTATGGTGGTGGTGGCTATGGTGGAAATGCTTCCGGTGGTTATGGTGATGGTGGCTATGGTGGAAATGCTGGTGGAGGTGGATATGGTGCAGGTGGCTATGGATCAGGTGGCAATTATGGGGACAGTGGCTCTGGCAATAACTATCCTGCTGCTGACAGCATTGGAACTGGTGGTGCCGATGGCAGCTACAACAGAAATTTTGGTGATGTTGGTGGGGTAGGCAATCATGAAAGCTCTACTGGTTTTGCCGGTAGTGGATATGATGGAAGTGCTGTGGATGGTGGTGTTGCAGGTACTGGCACCAGCTTTGCTGATGGAAGTGGAGGGTTCGGCAGTGGTCAATTTGATGGCAAGGCAAGCGGCAACGGAGATGAGGATTTGGGAGACTACAGGGATGACAATGACGATACTGATAATTTTGCAAAAAGGGCTTGA 930 0.4828 MAFFGRIGNLLRQTASRQVSSELRSSPSFFQAIRCLSSAPSTKLFIGGVAYTTDEQSLREAFSKYGEVIDARIIMDRETGRSRGFGFVTYTSVEEASSAIQALDGQDLHGRQIRVNYANERPRGSFGGGGGYGGSYGGGGYGGAYGGSAYGGGGGGGYGGNVSSGYGGGGYGGNASGGYGDGGYGGNAGGGGYGAGGYGSGGNYGDSGSGNNYPAADSIGTGGADGSYNRNFGDVGGVGNHESSTGFAGSGYDGSAVDGGVAGTGTSFADGSGGFGSGQFDGKASGNGDEDLGDYRDDNDDTDNFAKRA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04760 309 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 220 - -
Spst3g04760 309 MobiDBLite consensus disorder prediction 259 309 - -
Spst3g04760 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Spst3g04760 309 SMART rrm1_1 43 116 IPR000504 GO:0003723
Spst3g04760 309 PRINTS Eggshell protein signature 215 233 - -
Spst3g04760 309 PRINTS Eggshell protein signature 179 189 - -
Spst3g04760 309 PRINTS Eggshell protein signature 152 167 - -
Spst3g04760 309 PRINTS Eggshell protein signature 38 54 - -
Spst3g04760 309 CDD RRM2_NsCP33_like 43 118 - -
Spst3g04760 309 Gene3D - 12 137 IPR012677 -
Spst3g04760 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Spst3g04760 309 SUPERFAMILY RNA-binding domain, RBD 37 135 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04760 Spst-Chr3 99357859 99359476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04760 44 183 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 4.60e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04760 K12741 - gmx:100799124 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04760 3 99357859 99359476 Spst3g04760 3 99357859 99359476 ECH