Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04755 ATGGCGTCGTCGGCGGCGAAGAGATGCCACTACGAAGTACTCAGTCTTCCCATCGACTGCACCGCCGACGAGATCCGCTCCTCCTACCGCCGCCTCGCCCTTCAGCGCCACCCCGACAAGCTTGTAAAATCGGGTCTCTCCCAAGAGGAAGCTACCGCGCAGTTCCAGGAACTCCAACATGCCTACGAAGTCCTTTCCGATCCCAAGGAACGTGCTTGGTACGATTCCCACCGTTCCCAAATCCTATTCTCCGATCCCAATTCTCTCTCCAACTCCCGCTCCAACCTCCTCATCCCCGACCTCTTCCCCTTCTTCTCCAACACCGTCTATTCAGGTTACTCCGACACTGGAAAGGGCTTCTATAAAGTTTATTCCGATGTTTTCGATAAAATCCACGCTAATGAAATCAATTTCGCGCGGAAAATGGGGCTGGGAGTTGATGCTGTTCGACAGGCCCCTGTCATGGGGAACTTGGAAAGCCCCTACGCGCAAGCTACTGCGTTTTATGCATATTGGCTAGGGTTTTGTACTGTGATGGATTTTTGTTGGTTGGATGAGTATGATGTTATGGCGGGGCCTAACCGGAAGTCCAGGCGGCTTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGTTGAAGAGGAGTGTGGAGATGGAGAAGAAGAAAGAGGAGGAAAGGGAGAGGAAGAAGAAGTTGGAGAAGGAAAGGAAGGAGAGGGCCATGGCGTATGAGGAGCCTGATTGGGCTAAGGTCGAAGAGGAGGAGGAGGAGGTGGTGGAGGAATGGGTTGAGGAGGTGGAGGAGAAGAAGAATGAGAAGGAGTTTTATTGTGTGCTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAACCATGAGCAGTCCAAGAAGCACAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTAGTGACGAGGAGGATTTGAAAGAAAGAAATGAGGGATTGGGAAGTGAGGAAGATGGGGTTGGGGTGAATGATGATGGTGGTTTGGAGGCGAGGATTAGGGATGGTCTTAATGTTGAAGAGGGAGAAACTAGAAACGGGGCTGAACTGGATGATGATGATGATGTTGATGTTGATGAGTTTTTTTATGCTTCGAATGTGAAAGAGGGGGAAGATGCCAACGGGTCGGTTAAACTTGATGATGATGATGGCGATGAATACGAAGACAACGATGAAAATGGTGTTCTTGAAGCAATGTTGGCTGGCCACAAGAACAGAAAACCACGTGCTTCAATACACAAACCCAAGGTTTCAATAGCTCCATCTCAAATTGAAAATGAGAATGATGAGGTTGACCCAATGGAATATAACAACCGGAAGAGCACAAGAAAGAAACGTGGAGCAAAGAAAGAGAAGAGTAAGAAAAGTTGGGAAGAATATCAAGGGGCTGCTTCCAGTTGCAATGATGAGAATTTAAATAGTAATGGAAATGACAATTCTCATACCGAGGAGTCTTGTTCCCTACATTTTGTGGAAAATGAGGGTGATGGTGTAGGGAACGAGCAGGTTAGTAGAGATAAAAAGATTTCAAACCAACCAGATAAAAAAGGAGCTGGCAAAGACACAAAAACCAAAGCAAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCAAAGAACATTAGCAATACTTGTGATACGTGTGGAGAGGAGTTTGAGTCAAGGTAA 1779 0.4688 MASSAAKRCHYEVLSLPIDCTADEIRSSYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSNSRSNLLIPDLFPFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKMGLGVDAVRQAPVMGNLESPYAQATAFYAYWLGFCTVMDFCWLDEYDVMAGPNRKSRRLMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMRLKRSVEMEKKKEEERERKKKLEKERKERAMAYEEPDWAKVEEEEEEVVEEWVEEVEEKKNEKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSISDEEDLKERNEGLGSEEDGVGVNDDGGLEARIRDGLNVEEGETRNGAELDDDDDVDVDEFFYASNVKEGEDANGSVKLDDDDGDEYEDNDENGVLEAMLAGHKNRKPRASIHKPKVSIAPSQIENENDEVDPMEYNNRKSTRKKRGAKKEKSKKSWEEYQGAASSCNDENLNSNGNDNSHTEESCSLHFVENEGDGVGNEQVSRDKKISNQPDKKGAGKDTKTKAKISSKGRKAKVTSKNISNTCDTCGEEFESR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04755 592 MobiDBLite consensus disorder prediction 364 381 - -
Spst3g04755 592 MobiDBLite consensus disorder prediction 314 352 - -
Spst3g04755 592 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 592 IPR044648 -
Spst3g04755 592 CDD DnaJ 9 67 IPR001623 -
Spst3g04755 592 MobiDBLite consensus disorder prediction 412 429 - -
Spst3g04755 592 SUPERFAMILY beta-beta-alpha zinc fingers 294 342 IPR036236 -
Spst3g04755 592 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 331 IPR013087 -
Spst3g04755 592 Coils Coil 279 299 - -
Spst3g04755 592 Pfam Zinc-finger double-stranded RNA-binding 302 327 IPR022755 -
Spst3g04755 592 Coils Coil 242 269 - -
Spst3g04755 592 SMART ZnF_U1_5 299 333 IPR003604 GO:0003676|GO:0008270
Spst3g04755 592 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Spst3g04755 592 Gene3D Classic Zinc Finger 291 352 - -
Spst3g04755 592 MobiDBLite consensus disorder prediction 314 575 - -
Spst3g04755 592 Pfam DnaJ domain 10 75 IPR001623 -
Spst3g04755 592 MobiDBLite consensus disorder prediction 535 564 - -
Spst3g04755 592 SMART dnaj_3 8 70 IPR001623 -
Spst3g04755 592 ProSitePatterns Zinc finger C2H2 type domain signature. 304 326 IPR013087 -
Spst3g04755 592 MobiDBLite consensus disorder prediction 495 520 - -
Spst3g04755 592 MobiDBLite consensus disorder prediction 382 396 - -
Spst3g04755 592 Gene3D DnaJ domain 1 92 IPR036869 -
Spst3g04755 592 PRINTS DnaJ domain signature 11 29 IPR001623 -
Spst3g04755 592 PRINTS DnaJ domain signature 50 70 IPR001623 -
Spst3g04755 592 PRINTS DnaJ domain signature 29 44 IPR001623 -
Spst3g04755 592 SUPERFAMILY Chaperone J-domain 7 79 IPR036869 -
Spst3g04755 592 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04755 Spst-Chr3 99295032 99297821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04755 1 592 C2H2 Transcription Factor Family AT1G74250 51.506 1.07e-172 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g04755 DnaJ 2.7e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04755 K09506 - gmx:100788305 853.973