Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst3g04743 | ATGGAAGGAGATCAAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGCCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATCGCCAACCTGTCGTCGGAGGAAAAAGAAAAGCTTCCCGCGAGGAAGCTTTTTTCATCGCCTCTCGACAATGATGGAGACAAAGATTCTGAAGCTGCTGCAACCAACGCTGGCTATGGCCTCAGAGAGAACCCCAAGAAGACTTGGAGAATCTCAGATCATTCAAGCGAAGACGCTTTGGCGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTCCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCACTCCGAGAAAGAGAGAATTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATGCTAAGGTGGTCATGGATAGTCAATCTGATAACGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTTGCTTCTGCTGCAGCAACTTCTTCGGTTGTATCTTTTGCCAATCCTTCCTCTTCCATCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTCAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCAGTTCGAACTAGTCTGGTTGCCAAATTTGATGGCAACAAGAATTTCACTCCTGACAAATTAAAAGTGATCAAGCAAAGTCATAATAAGGGGGAGGTTGGCAATTCGGAAAATCCCAACTCTACCAGAGGGAAGAGTTCACAACTTTTGCCTACTACTGCTTCTACGAGGATTACTGAAAATGGATTTAGAGTGAACAAAAGTGGAGTTTCCAATAAAGGATATGAAAAGGTCAACAAGTCTGAGCTTGAGGATGTGCCTCCATTGGAGGATTCTGAAGGGGAACATGGGAGGAGCAGAGTCAATGGACCAGAATCAATTTTATCGAAGTCCGCTACTGGCAGCAAGTACAATTCAATCAAGACAAAGTTTCTCGGTTCTGAATTGAAGTCAAGTAAGAACTGGGTGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTCTTAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAGGGGTGCTTTGCTTCAAAAAACGAGAGCAGTGAAAACAGCATTGAAACTGATCTCTCTCCTGACCCAATAACAACCGAAAACAAGCTCATGAAGAACACTGACCGTAAGTATCTGGGGGAGCACCAACATGGTTCTGGTTTTCATAATGAGGTGGAAACTGTTACTGAGTCCAAGAAGAGCAAGGGGCATGAGTGCCCAATTTGCCTCAAAGTTTTTCCATCAGGCCAAGCCCTGGGTGGCCATAAGAGATCTCATATGACGGGTGGGTCTGAGAGTAGAAGCTTTCAAACAGTTGTACTTCAGGAACCAGTGGCAGAAATTAGGGACTTACTTGATCTTAATCTTCCAGCTGCTACTGAGGAAGAAAGCAACAGTCATGCTGACTCAAACAAACCCTGGTGGATAGTAGAAGACAACCACAAGCAGGAGGCACTGGTAGGCCTGATCTCATAG | 1686 | 0.4549 | MEGDQIQELKHACKFCAKCFPCGRSLGGHMRSHIANLSSEEKEKLPARKLFSSPLDNDGDKDSEAAATNAGYGLRENPKKTWRISDHSSEDALAFDKFCKECGKGFHSWKALFGHMKCHSEKERISNSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTVASAAATSSVVSFANPSSSISEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTSLVAKFDGNKNFTPDKLKVIKQSHNKGEVGNSENPNSTRGKSSQLLPTTASTRITENGFRVNKSGVSNKGYEKVNKSELEDVPPLEDSEGEHGRSRVNGPESILSKSATGSKYNSIKTKFLGSELKSSKNWVDKASEAESSKNSLKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASKNESSENSIETDLSPDPITTENKLMKNTDRKYLGEHQHGSGFHNEVETVTESKKSKGHECPICLKVFPSGQALGGHKRSHMTGGSESRSFQTVVLQEPVAEIRDLLDLNLPAATEEESNSHADSNKPWWIVEDNHKQEALVGLIS | 561 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst3g04743 | 561 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 33 | IPR013087 | - | |
| Spst3g04743 | 561 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 545 | - | - | |
| Spst3g04743 | 561 | SUPERFAMILY | beta-beta-alpha zinc fingers | 385 | 496 | IPR036236 | - | |
| Spst3g04743 | 561 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 476 | 496 | IPR013087 | - | |
| Spst3g04743 | 561 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Spst3g04743 | 561 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 385 | 412 | IPR013087 | - | |
| Spst3g04743 | 561 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 474 | 496 | IPR013087 | - | |
| Spst3g04743 | 561 | MobiDBLite | consensus disorder prediction | 142 | 163 | - | - | |
| Spst3g04743 | 561 | MobiDBLite | consensus disorder prediction | 255 | 344 | - | - | |
| Spst3g04743 | 561 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Spst3g04743 | 561 | MobiDBLite | consensus disorder prediction | 52 | 72 | - | - | |
| Spst3g04743 | 561 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Spst3g04743 | 561 | Pfam | C2H2-type zinc finger | 474 | 497 | - | - | |
| Spst3g04743 | 561 | Pfam | C2H2-type zinc finger | 11 | 33 | - | - | |
| Spst3g04743 | 561 | Pfam | C2H2-type zinc finger | 385 | 409 | - | - | |
| Spst3g04743 | 561 | SMART | c2h2final6 | 11 | 33 | IPR013087 | - | |
| Spst3g04743 | 561 | SMART | c2h2final6 | 385 | 407 | IPR013087 | - | |
| Spst3g04743 | 561 | SMART | c2h2final6 | 474 | 496 | IPR013087 | - | |
| Spst3g04743 | 561 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Spst3g04743 | 561 | MobiDBLite | consensus disorder prediction | 308 | 331 | - | - | |
| Spst3g04743 | 561 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 387 | 407 | IPR013087 | - | |
| Spst3g04743 | 561 | Gene3D | Classic Zinc Finger | 382 | 496 | - | - | |
| Spst3g04743 | 561 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 38 | IPR013087 | - | |
| Spst3g04743 | 561 | MobiDBLite | consensus disorder prediction | 260 | 306 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst3g04743 | Spst-Chr3 | 99169608 | 99171293 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst3g04743 | 4 | 532 | C2H2 Transcription Factor Family | AT1G26610 | 36.197 | 2.39e-70 | 231 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Spst3g04743 | zf-C2H2_6 | 2.1e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst3g04743 | - | - | gmx:102669916 | 889.797 |