LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g04725	ATGGGGTGTGTTGTGGCGAAACAGGCGGTTTCCGTCACGCCTGCGATTGAGCACTCGGTTGAGTCGGATAAGAATAGGAAGAAGAAGACAGGGTCAGGTAGGAGCGAGTTGGGTGAGTCAGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGGAACCTCAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCGGGTTGGCCGGCGTGGCTCAGCGCCGTCGCGAGTGAGGCTATTCACGGTTGGGTCCCTCTTCAAGCCGACGCATTTGAGAAACTTGAAAAGATTGGGCAGGGAACATATAGCAGTGTTTTCCGAGCAAAGGAGATTGAGACCGGGAAGATAGTAGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCAGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAATTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAGTTATTATCTGGTCTTGAGCATTGTCACTCACGGGGTGTGATGCACCGGGACATCAAAGGATCAAATCTTTTAGTAAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGACTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACCAGTCGTGTAGTCACGTTATGGTATCGTCCTCCAGAACTTTTGCTTGGTTCAACAGATTATGGTCCATCCGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGAAGAATACTGGAAAAAGACCAGGCTTCCTCATGCAACATTGTTCAAGCCTCAGCAACCATATGATAGTTGCCTCCGAGAGACATTTGAAGATTTTCATGCATCCAGCGTAAATCTTATTCAAACTCTTCTTTCTGTTGAACCGAGCAAACGTGGGACAGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGCGACCCGTCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAGGAGGAGTCAAGAAGGAAAAAGATTGGTGGGAGAGCTGGCGCACAAGAATCAAGAAAACCATCAAGAAAGCCACTAGGATTGAGTAAATTAGCCCCAGCAGAGGATTTGACAACTCAAACTTCCCAAAAGAAAGATGATAGATGTGTCCACATCCTTAAAGAAGAGAACACAAACACAGGCGAGGAGGTGCCAAAGCAGTCTAGTGGTAAACCAGAAGATGCTTCCCAGGTGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCTTGGGCAAAAAGGCGTAGAGATGACACTTCAATTAGAGCTCACAGTCGGTCTATTTCTAGAGGATATATCTTTAATGCATTGGAAACTTCTACACTAAATTCAAGGAATAATTCTGAATTCAGAAACTATGAAAATAATGATTTTTTCGGGACATGCACCAACCCTAGGGCCCATGACCTACTTGAAATTTCTAAGCTTGCCATGAAAAAACAATGGAATAAGTTTGATCGTCCAGATTCATTTGATACTGAGGAGTACCATTCACAAGAACTGTCCATGGCGCTTTATAACAGGCAAGATTCACTATCCAAGAGAAGTAACCTGAGTTGTCAGGATCAAGGAGAAAAGGTAGAGTTTTCAGGGCCTCTATTATCTCAAATGCACACAGTAGATGAGCTCTTAGAAAGACATGAGCGTCAAATCCGTCGTACTATCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAATAA	1992	0.4433	MGCVVAKQAVSVTPAIEHSVESDKNRKKKTGSGRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLQADAFEKLEKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRETFEDFHASSVNLIQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRAGAQESRKPSRKPLGLSKLAPAEDLTTQTSQKKDDRCVHILKEENTNTGEEVPKQSSGKPEDASQVKNASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSIRAHSRSISRGYIFNALETSTLNSRNNSEFRNYENNDFFGTCTNPRAHDLLEISKLAMKKQWNKFDRPDSFDTEEYHSQELSMALYNRQDSLSKRSNLSCQDQGEKVEFSGPLLSQMHTVDELLERHERQIRRTIRRSWFQRGKKQGK	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g04725	663	ProSitePatterns	Protein kinases ATP-binding region signature.	101	124	IPR017441	GO:0005524
	Spst3g04725	663	FunFam	probable serine/threonine-protein kinase At1g54610	178	418	-	-
	Spst3g04725	663	MobiDBLite	consensus disorder prediction	444	465	-	-
	Spst3g04725	663	FunFam	probable serine/threonine-protein kinase At1g54610	82	177	-	-
	Spst3g04725	663	MobiDBLite	consensus disorder prediction	466	487	-	-
	Spst3g04725	663	MobiDBLite	consensus disorder prediction	390	494	-	-
	Spst3g04725	663	MobiDBLite	consensus disorder prediction	398	423	-	-
	Spst3g04725	663	MobiDBLite	consensus disorder prediction	19	35	-	-
	Spst3g04725	663	Gene3D	Transferase(Phosphotransferase) domain 1	178	418	-	-
	Spst3g04725	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	215	227	IPR008271	GO:0004672\|GO:0006468
	Spst3g04725	663	SMART	serkin_6	95	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g04725	663	MobiDBLite	consensus disorder prediction	17	50	-	-
	Spst3g04725	663	Gene3D	Phosphorylase Kinase; domain 1	82	177	-	-
	Spst3g04725	663	PANTHER	CELL DIVISION PROTEIN KINASE	93	383	-	-
	Spst3g04725	663	SUPERFAMILY	Protein kinase-like (PK-like)	89	386	IPR011009	-
	Spst3g04725	663	CDD	STKc_CDK9_like	95	379	-	-
	Spst3g04725	663	ProSiteProfiles	Protein kinase domain profile.	95	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g04725	663	Pfam	Protein kinase domain	95	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g04725	Spst-Chr3	99009492	99014811	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g04725	87	437	Core Cell Cycle Gene Families	AT5G10270	49.867	2.15e-116	356

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Spst3g04725		Pkinase	2e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g04725	-		-	gmx:100784406	1196.8