Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04716 ATGGACGCTGGAACTGAGACTGAGGAACTTATTAATTTGAACAACAAAGCAAGTAACTGTGGTGGGAATGAAAGTAAAAGTGGCGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGAGGTGTTCTTACCAGGTTACTTCAGTAAGGTCAGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTAGCTGAAGTTGACCTTCCAGTAAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCTCAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTACCTAGTAAAACCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGAGTTTGATCTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACAACCTTGTTCTCTGATGACACAGATGACAGGTCCAAAAGAAGCACTAATCCAGAGACAGAGTTATCAATTCCAATAGAACAAGAGGCTAGTATTGCCACTGCTGTTGCTGTTGTGGTGGAGCTTCCCAATGGTCTTGTATCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGTCGAACAGGACATTTTTCATCTGGTCCTAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCATTTTTCACCTATGTCAAAGCAACAGCACTGAAGAGCAACACTGAAGAGAGTGCTCATGTTGACACTACTACTACTACTACAGAAGTTAGGGTGGAAGATGAAAATCAAGCATGTCGTGAACAGGAGGGTGATGACCTTAAAGCATATGAAAATGGAGAAATATTTGAAAACCACTCACCAGATGACTTACCCAGCAGCAACAGTATCCCTGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCATCTATGGAAGTTTCGCAACAAAAGCATTACAGGGAGGAACACTCTCAGGGAGTAGTGCATCCAAGAAAAGGAAGCCATGGTTCCGAGCCTGCTCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAAATGTATCAAAAAAACATCCAGGACCTGCGAAATCATTCTGGTTCTTCTATGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCATGCAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCATTAGGAGGTTCAAGTTCATGTGAAGTAAAATTAAGTACGGTTGACAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAACGTTGTTTTGATAAGAAAATTAGGTATGTCAACAGAAAAAGGCTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTCAGAAAGTTGAATGGTGTTAATATGGATCTTAATGGACAACCTGCTTCCACTGATTATGAAGAAGAGGATGGAGAGGAGGAAGACAACCATGTAGCAAGAGATTCTTCTGCTGAGGATGTTTGA 1686 0.411 MDAGTETEELINLNNKASNCGGNESKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVRSARQVIDALNAEGQYIDMILAEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFDLVASDPSDANTNSTTLFSDDTDDRSKRSTNPETELSIPIEQEASIATAVAVVVELPNGLVSEYQPDVPGISDRRTGHFSSGPKKSELKIGESSAFFTYVKATALKSNTEESAHVDTTTTTTEVRVEDENQACREQEGDDLKAYENGEIFENHSPDDLPSSNSIPDSFSIERSCTPPASMEVSQQKHYREEHSQGVVHPRKGSHGSEPAQHAYPYYISGVVNHVMMPSSAQMYQKNIQDLRNHSGSSMIAQYNHLPQCPPHASGMTSFPYYPMSICLQPGQISTTHSWPSLGGSSSCEVKLSTVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVNMDLNGQPASTDYEEEDGEEEDNHVARDSSAEDV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04716 561 ProSiteProfiles CCT domain profile. 481 523 IPR010402 GO:0005515
Spst3g04716 561 Pfam CCT motif 481 523 IPR010402 GO:0005515
Spst3g04716 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 193 IPR045279 GO:0009736
Spst3g04716 561 MobiDBLite consensus disorder prediction 241 260 - -
Spst3g04716 561 Gene3D - 37 226 - -
Spst3g04716 561 SMART REC_2 37 152 IPR001789 GO:0000160
Spst3g04716 561 MobiDBLite consensus disorder prediction 185 209 - -
Spst3g04716 561 MobiDBLite consensus disorder prediction 527 561 - -
Spst3g04716 561 SUPERFAMILY CheY-like 35 163 IPR011006 -
Spst3g04716 561 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Spst3g04716 561 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04716 Spst-Chr3 98925966 98929964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04716 24 560 Response Regulator Gene Family AT5G61380 49.524 1.99e-173 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Spst3g04716 Response_reg 3.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04716 K12127 - gmx:100786522 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04716 3 98925966 98929964 Spst3g04716 3 98925966 98929964 ECH