Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04709 ATGGAAAAAGTTTCTGTGCTGTCCAAGGAAGACGATTACATGGATTTGCCTCCGGGATTTCGGTTTCATCCCACCGATGAAGAGCTTATTTCCCATTACCTTTACAAGAAGGTTATTGACACCAAGTTTTGTGCTAGAGCCATTGGAGAAGTCGACCTCAACAAGTCTGAGCCTTGGGATTTACCTTGGAAAGCAAAAATGGGCGAAAAGGAATGGTACTTTTTCTGTGTGAGGGATAGAAAATACCCCACTGGGTTGAGAACCAACAGGGCGACTGAAGCCGGGTACTGGAAAGCCACGGGGAAAGATAAAGAGATTTTCAAAGGAAAATCTTTGGTCGGAATGAAAAAAACTCTTGTTTTCTACCGAGGTCGAGCACCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAGTACAGACTCGAGGGGAAATTCTCTGTTCACAACCTCCCCAAAACCGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCGGGGAAGAAAACTCATATTTCGGGGATAATGAGGTTGGATTCCTTTGCAAATGAATTGGGTTCTTCTGCTCTGCCACCCCTTTCGGATTCTTCTCCTTCTGTTGGCAACACTAAACCGCTCAATGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAATCAAGAAGGGTTCTTTGATTCCTTCAACAACTCTACTTACGGGGTTTCTTCAAATCCTTTGGACTTTCTTCCAAGAATGCCACCTTCTGCCTCGTTCTACTCCACTCAAGGTGTTCAAGCTGTGCCTAATTTGACATTTCCCGGTTCTGTTTACGCTCTGCAGGACCACACCATTCTGAGAGCTATGAGTGAAAACAATGGTAATGGATACAAATCAGAGAGGGACATGATCAGCGTCTCACAGGAAACGGGTCTTACTACTGATATCAACCCTGAAACCTCTTCAAATTTTGATATGAATAGGAGGCACTTTGACAATCACAGTCATCCACCTGTTTCTGTTGCCCCTTTGGATCTTGATGGTTTGTGGAATTATTAA 1059 0.4448 MEKVSVLSKEDDYMDLPPGFRFHPTDEELISHYLYKKVIDTKFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFANELGSSALPPLSDSSPSVGNTKPLNESAYVPCFSNPIDVQRNQEGFFDSFNNSTYGVSSNPLDFLPRMPPSASFYSTQGVQAVPNLTFPGSVYALQDHTILRAMSENNGNGYKSERDMISVSQETGLTTDINPETSSNFDMNRRHFDNHSHPPVSVAPLDLDGLWNY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04709 352 FunFam NAC domain-containing protein 100-like 25 170 - -
Spst3g04709 352 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Spst3g04709 352 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Spst3g04709 352 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Spst3g04709 352 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Spst3g04709 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04709 Spst-Chr3 98891706 98892978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04709 14 352 NAC Transcription Factor Family AT5G07680 58.702 2.77e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g04709 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04709 - - gmx:100798002 660.603