Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04699 ATGTTTCGTGTATATTTTGCCAACTTCCTTTCACACTCCCTCGTTCTATTCTACCTACTGTTATCTTATTTCCTTTCACTACTTCAGCATGATCATGGAGTCTCAGCCTCTTATGGGTTGGAGCTCTTACAGTTTTTAGTTTTCATCATTGGAATGCCTTTTCTCAGAGATAATGGTGAACTGTATCTTCCACTACACGATTTTCCCTTACAAGACTACAATCTTGATGCTGTTCCTCTTATGGAGTATTACCCTTCAGATCCTTTATATGAAACACTCGCCATCGACCCAACATCAAGCCTGCGAGATACTGGTTATCTTGTCACAGCAGACTATGATTTTTATGACATTCAAAAGGGCCTTCCTGTGTGGAACGAGGTGGATGCTGTGTTTGATTCGGAAAAGGCTTTTTTATTTCGCAACAAAGAAGAAAGTGGAGGAATTGTGAAGGAAGTGATGGAGGATAGAAAGGTTAACCAAGGGAGAGAAGAGAGAATGAACTGTAGCAGTAGCAGAATGTTATCAAGGAAGACCATATCTCAATACTTCTACATGCCAATAACACAAGCTGCCAGGGAACTTAATGTGGGGCTGACACTTTTGAAGAAAAGGTGCAGAGAGTTGGGTATAAGAAGGTGGCCCCACAGGAAGCTGATGAGCTTGCAAACTCTGATAAATAATATACAGGAGCTACTGAAAGAGGAGGGCCCAGGGAGTGAAGAGAAGTTAAGAAGTGCCATAGAGATATTGGAAAGTGAAAAGAAGCTTTTGGAGGAAATGCCAGATATTGAACTGGAAGATAACACAAAAAGACTTAGACAGGCATGTTTCAAGGCCAATTACAAGAAAAGGAAGCTAGGGCAGAGGGAACCACAGTGTTCTTCTTGGAGTGGCTGTGGTAGAAGTATTGACACATTGGGAGAATATAGTAACGAAAGTGAAGAAGAACGAGACATCAATTATCTGATGTCTCATTATCGCGTTACATACATAGTCTCCGATGTGAAGAAGGTCTCCATCACACTAATATCTTCCAGACATAGCCCAATTGGCAAAGCATCTATCATTACTTTCATTGCCAACCCCCACCCCAAAACCCTCCATTCAATATTTAAATTGATAAAGTTCGTTGGTGATCACTAG 1143 0.4112 MFRVYFANFLSHSLVLFYLLLSYFLSLLQHDHGVSASYGLELLQFLVFIIGMPFLRDNGELYLPLHDFPLQDYNLDAVPLMEYYPSDPLYETLAIDPTSSLRDTGYLVTADYDFYDIQKGLPVWNEVDAVFDSEKAFLFRNKEESGGIVKEVMEDRKVNQGREERMNCSSSRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNIQELLKEEGPGSEEKLRSAIEILESEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKLGQREPQCSSWSGCGRSIDTLGEYSNESEEERDINYLMSHYRVTYIVSDVKKVSITLISSRHSPIGKASIITFIANPHPKTLHSIFKLIKFVGDH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04699 380 ProSiteProfiles RWP-RK domain profile. 156 242 IPR003035 -
Spst3g04699 380 PANTHER PROTEIN RKD4 164 289 IPR044607 GO:0003700
Spst3g04699 380 Pfam RWP-RK domain 174 221 IPR003035 -
Spst3g04699 380 Coils Coil 240 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04699 Spst-Chr3 98794395 98799929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04699 167 291 AtRKD Transcription Factor Family AT1G18790 69.841 5.44e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst3g04699 RWP-RK 7.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04699 - - gmx:100788666 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04699 3 98794395 98799929 Spst3g04699 3 98794395 98799929 ECH
Spst3g04699 3 98794395 98799929 Spst9g02360 9 55886843 55888128 PCT