Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04694 ATGAACATGGGGAGGCCACCTTGCTGTGACAAAATTGGAATTAAGAAAGGACCTTGGACTCCGGAGGAGGATATCATGTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCGGTTCCCCCCAACACAGGTTTGATGAGATGCAGTAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAGACGAGGTAATTTCACCGAAAATGAGGAGAAGATAATAATCCACCTCCAAGCCCTTTTGGGTAACAGATGGGCTGCTATAGCTTCATACCTTCCAGAAAGAACAGACAACGACATAAAAAATCATTGGAATACCCATTTGAAGAAGAAGCTGAAATCAAATAATCGAAGTGGTGGGAATGAGGGTGTGGACCAAGAAGGACAATCTTCTTCTTCACATCTGAAGGGTCAGTGGGAGAGACGATTACAAACAGATATCCAAACGGCCAAGCAAGCCTTGTGTGATGCTTTGTCCCTTCACAGGCCGGCAGCAACACATGCTTTGCCTGATACCAAGCCTTCAAGTTCTGATCAACCCTACAACCATGCATCACCTTCATATGCATCAAGCTATGAAAACATTTCCCGGTTGATGGTAAACTGGATGAAATCTCCAAACACAAACGAAACAAACTCACTAGGGGATTCTTCCTTCAATAACATGGTCAATAATACACCGAGACCCAGTTCTAGTGAGGGAGCACATAGCACCAGTAATACCACGTGTGCACAAGATCATTTTTTTGACTTGTTCATCCTCAACTCCCCCAAACACAATGGTTCTCCATCTCAGAATCAAGTGCCTCTTACTCTGATAGAGAATTGGCTTTTTGAGGAAGGGGCTTCTCAGTGTCATGAAGATCTGTTGAACATGTCGCTGGAAGAAAGTACTTCAGGTTTGTTTTAG 927 0.438 MNMGRPPCCDKIGIKKGPWTPEEDIMLVSYIQEHGPGNWRSVPPNTGLMRCSKSCRLRWTNYLRPGIRRGNFTENEEKIIIHLQALLGNRWAAIASYLPERTDNDIKNHWNTHLKKKLKSNNRSGGNEGVDQEGQSSSSHLKGQWERRLQTDIQTAKQALCDALSLHRPAATHALPDTKPSSSDQPYNHASPSYASSYENISRLMVNWMKSPNTNETNSLGDSSFNNMVNNTPRPSSSEGAHSTSNTTCAQDHFFDLFILNSPKHNGSPSQNQVPLTLIENWLFEEGASQCHEDLLNMSLEESTSGLF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04694 308 MobiDBLite consensus disorder prediction 123 145 - -
Spst3g04694 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 237 - -
Spst3g04694 308 MobiDBLite consensus disorder prediction 117 145 - -
Spst3g04694 308 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Spst3g04694 308 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Spst3g04694 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Spst3g04694 308 FunFam MYB-related transcription factor 15 68 - -
Spst3g04694 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Spst3g04694 308 MobiDBLite consensus disorder prediction 173 194 - -
Spst3g04694 308 Gene3D - 70 144 - -
Spst3g04694 308 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Spst3g04694 308 MobiDBLite consensus disorder prediction 176 194 - -
Spst3g04694 308 SMART sant 15 65 IPR001005 -
Spst3g04694 308 SMART sant 68 116 IPR001005 -
Spst3g04694 308 CDD SANT 71 114 IPR001005 -
Spst3g04694 308 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Spst3g04694 308 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Spst3g04694 308 CDD SANT 18 63 IPR001005 -
Spst3g04694 308 MobiDBLite consensus disorder prediction 215 246 - -
Spst3g04694 308 Gene3D - 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04694 Spst-Chr3 98740047 98741380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04694 3 308 MYB Transcription Factor Family AT5G62470 50.693 4.58e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04694 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04694 K09422 - gmx:100812460 484.567