Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04688 ATGGAGGGAGGCGACGATCTCCACCACCACCATCACCACAACCACCATCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCAAGAGGCGGCGTCTTGCTCCACCTCCTCCCCCTATCCTTCCCTAGCAATCTCCGCGGAACCCAGCACGTCCAATTCCACCCGATCCAACCAGCTCGCCGCAGCGTCGGAGCCGCCAAACAGCAAGAAACCGCCGCCGAAACGCACGTCGACGAAGGATAGGCACACGAAGGTGGACGGTCGTGGCCGCCGCATCCGAATGCCCGCCCTCTGCGCCGCCCGCGTCTTCCAACTCACCCGCGAACTCGGTCACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCGTCATCGCTGCCACAGGTACCGGCACCATCCCCGCTAACTTCACCTCCCTCAACATCTCCCTCCGTAGCTCCGGCTCCTCCATGTCCGTACCCTCCCAGCTCCGATCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGGCGCACCTTGTTCCCCGGCATCGCCTTATCCTCCGACACCACCAACACCAATACCTCCACACTCCTCAATTTCCAATCCAACAACCTCAACACCTCCATGCTCCAGGCCAAGCCCGAAGCCCCCTCCTCCACCTTGGATTTGTCAGATACAAGCGCAGAGGAATCAACCCTAGGCCGAAAAAGAAGACCAACCGAACAAGACCTATCCACCTCGTCGCAGCACCAAATGGGAAGTTATCTCCTCCAGTCGAGTGCAGGCGCGATTCCTGCGAGCCACGCCGCCAACATATGGATGGTGGCGAATTCAAACTCTAATCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCTCCGGTTAACAACAGTGCCTTGTATCGAGGCACCATGTCTAGTGGGTTGCATTTCATGAACTTTCCCACGCCCATGGCGCTTTTGCCGAGTCAGCAACTAGGGTCTTCTGGGATTGGCGCGGTTGGGGGAAGCAGTCATAATAGTAATAATAATAATAATAATATGAATGAAGGGCATTTGAGTATGCTTGCGGGGCTTAGTCCTTATCGTCCTGTTATCGGTGTTTCTGAATCTCAGGCGAGTGGCTCGCAATCGCACCGTGGAGGTGGCGCCGATGATCGCCATGATAGCACCAGTCACCACTCCTAG 1200 0.5692 MEGGDDLHHHHHHNHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPSTSNSTRSNQLAAASEPPNSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDTTNTNTSTLLNFQSNNLNTSMLQAKPEAPSSTLDLSDTSAEESTLGRKRRPTEQDLSTSSQHQMGSYLLQSSAGAIPASHAANIWMVANSNSNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSHNSNNNNNNMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGGADDRHDSTSHHS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04688 399 MobiDBLite consensus disorder prediction 385 399 - -
Spst3g04688 399 MobiDBLite consensus disorder prediction 1 95 - -
Spst3g04688 399 MobiDBLite consensus disorder prediction 337 357 - -
Spst3g04688 399 MobiDBLite consensus disorder prediction 216 232 - -
Spst3g04688 399 MobiDBLite consensus disorder prediction 373 399 - -
Spst3g04688 399 MobiDBLite consensus disorder prediction 20 34 - -
Spst3g04688 399 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 358 IPR005333 GO:0003700
Spst3g04688 399 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Spst3g04688 399 MobiDBLite consensus disorder prediction 233 247 - -
Spst3g04688 399 MobiDBLite consensus disorder prediction 216 254 - -
Spst3g04688 399 Pfam TCP family transcription factor 80 248 IPR017887 -
Spst3g04688 399 MobiDBLite consensus disorder prediction 35 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04688 Spst-Chr3 98685234 98686433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04688 72 393 TCP Transcription Factor Family AT3G47620 44.762 2.13e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst3g04688 TCP 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04688 - - gmx:100790785 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04688 3 98685234 98686433 Spst9g02350 9 55537432 55538580 ECH
Spst3g04688 3 98685234 98686433 Spst3g04688 3 98685234 98686433 ECH
Spst2g01768 2 16625298 16626575 Spst3g04688 3 98685234 98686433 PCT