Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04687 ATGGGGGTAATAGGACGGTGGGGTCAAAACCTTATCGGTTCCAGGTGTTGGCTCAGGTGGTGGGGTCCGGCTGCTGGTTATTGCCCAAACCAATCAGTTGCTGGCATCACAGAAAGATCCATGGTGAGTCTTAATGACCCTACTGGGATATGCCCCACCATTCCATCAATCAGGACCCTTCATTTTATGGGCCATGCTGCTCCTATTCAATGCATGATTGGGTCTCTCTCTGCCCACCAAAGGGAAAACGTGGAATCTCCAATTGCTACTGAAACAGCAATCGCTGGGCCAGTGAAATTGCCCAAACACGGTGAGTCACATCCCTCACATGTAATGTTTGTGATCAGTAGAGGATTTGTCCTAGCTGTTGGCCTGGAACTCCCTCCACATGCACCAGCAGAGCAACTTGAAATTTTGTTGCTGGAAGGCTTTGTTCATATGGGATCAGAGAGTGCGACTCCTGCTGTTGAGACATCAAAAAACAGGTCTTCTTCTGGTAAAACGAACCAAGGGAAAGTCCCCAGGAAAATTCACAAGGCTGAAAGGGAGAAAATGAAACGTGAACATTTGAATGAACTCTTTCTTGACCTTGCCAATGCACTTGATGTAAATGAGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTGCTAGGTTGCTAAAAGACTTGCTCTCTCAGATCCAGTCCCTCAAGAAAGAGAACGTCACACTGTTGTCTGAATCGCATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAAACTCAAATTGAGAAACTTCAAGGTGAGATAAACGCAAGAGTGGCTCAATCTAAACCTGACCTGAACGTACATCCTCATTTGGAACTTGCGCCACTGGAGCAGCCAAATTTTCCAGGACAGAGTCTCCAATTGCATACCATGGAACCTAACTTGCAGCAAGGATCTGCAGTTTTGCTTGTCCCTTTTCCACCTGATCTTCAAGCCTCTTTTCCAGCTTCTAATGTTACCGAAGTCGCGCCAAATTCTACATCCGTTATCAGTAAACCGCATGCCAGGTACCCCACAGCAGCAGATTCATGGCCATCACAACTGCTTGGGTAG 1098 0.4645 MGVIGRWGQNLIGSRCWLRWWGPAAGYCPNQSVAGITERSMVSLNDPTGICPTIPSIRTLHFMGHAAPIQCMIGSLSAHQRENVESPIATETAIAGPVKLPKHGESHPSHVMFVISRGFVLAVGLELPPHAPAEQLEILLLEGFVHMGSESATPAVETSKNRSSSGKTNQGKVPRKIHKAEREKMKREHLNELFLDLANALDVNENNGKASILCEAARLLKDLLSQIQSLKKENVTLLSESHYVTMEKNELKEENCSLETQIEKLQGEINARVAQSKPDLNVHPHLELAPLEQPNFPGQSLQLHTMEPNLQQGSAVLLVPFPPDLQASFPASNVTEVAPNSTSVISKPHARYPTAADSWPSQLLG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04687 365 Coils Coil 248 268 - -
Spst3g04687 365 MobiDBLite consensus disorder prediction 152 171 - -
Spst3g04687 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 250 IPR036638 GO:0046983
Spst3g04687 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Spst3g04687 365 MobiDBLite consensus disorder prediction 152 177 - -
Spst3g04687 365 Gene3D - 166 240 IPR036638 GO:0046983
Spst3g04687 365 Coils Coil 220 240 - -
Spst3g04687 365 PANTHER TRANSCRIPTION FACTOR BHLH47 152 364 - -
Spst3g04687 365 CDD bHLH_AtILR3_like 179 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04687 Spst-Chr3 98671960 98684460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04687 151 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 47.436 5.72e-57 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04687 - - gmx:100809240 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04687 3 98671960 98684460 Spst3g04687 3 98671960 98684460 ECH