Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04680 ATGGAGTTGTATCCTGGGTTTGCTTTATACCGAGGGTTATATGAGTTAGCACAATTTTCCTTTGAAGGGAATAGTTCAGGGGCTAGTGGTATGAAGTGGCAGAATCTGAGTGAAAGCACTAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATAGTGATGCTTTTTGCTGCCTTCTACATTGACCAAGTATTGTCGTCAGGAAGTAGAAAAAATCCTCTTTTCTTCTTGAAAGGATCTCAGAAAAAGTCTCCTTTGCAAAAGCTTGGTACACAAATGCAGGTGTCAAAAGTATTCTCTCAAATTGAGAAACCTGATGTCATCCAAGAGAAGGAGAAGGTGGAGATGCTGCTTCTTGAACCGACTATTAATCATGCAATTTTATGTGAAGATCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATGCAGATAAATTTGCAGTGAGAGGGTTGTTCCTTTCTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCAACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGAAATATACACTACCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGGAGACTTAAAAATCTTAGAGGCTCAATCTTAACACAAGCAGTAGAAGAATCTTTGAAGGGTTTAAACCTTTTTCACGGAGGAGTTGCTGATAAACAAGTTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCACTAATTGGGGATCCCAAAGTTGTTTACATGGATGAACCAAGTTCCGGTTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATATTTGTAAATGGTAGCTTGCAGTGTGTAGGAAATGCAAAGGAGCTTAAAGCAAGATACGGAGGAACTTACGTGTTCACACTGACAACATCTTCGGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAATAAGATATACCATCTCTCTGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATAGCAGATGTTTTCGAAGCTGTTGATGCTGCAAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTTGCAAGTGAGGCTCAGACATTTGATACCTTGTCATGA 1359 0.4135 MELYPGFALYRGLYELAQFSFEGNSSGASGMKWQNLSESTNGMKEVLIIMFAEWIVMLFAAFYIDQVLSSGSRKNPLFFLKGSQKKSPLQKLGTQMQVSKVFSQIEKPDVIQEKEKVEMLLLEPTINHAILCEDLKKVYPGRDGNADKFAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMDEIYTTMGVCPQHDLLWENLTGREHLLFYGRLKNLRGSILTQAVEESLKGLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVFTLTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRIADVFEAVDAAKRKFTVSAWGLVDTTLEDVFIKVASEAQTFDTLS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04680 452 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 130 367 IPR003439 GO:0005524
Spst3g04680 452 FunFam ABC transporter A family member 7 119 395 - -
Spst3g04680 452 Gene3D - 123 398 IPR027417 -
Spst3g04680 452 SMART AAA_5 160 344 IPR003593 GO:0016887
Spst3g04680 452 ProSitePatterns ABC transporters family signature. 269 283 IPR017871 GO:0005524|GO:0016887
Spst3g04680 452 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1 83 IPR026082 GO:0016020|GO:0055085|GO:0140359
Spst3g04680 452 Pfam ABC transporter 155 296 IPR003439 GO:0005524
Spst3g04680 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 363 IPR027417 -
Spst3g04680 452 CDD ABC_subfamily_A 133 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04680 Spst-Chr3 98619870 98623787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04680 134 354 Calmodulin-binding Proteins AT2G36910 25.532 1.00e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04680 - - vra:106769009 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04680 3 98619870 98623787 Spst3g04680 3 98619870 98623787 ECH