Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04678 ATGGGGAAGTCACCTGGAAAATGGATCAAAACTGTACTGTTCGGGAAAAAATCATCCAGATCAAATATTTCAAAAGGAAGAGAGAAGCTTGTTAATAAAAAGGAAGGAGTAATAGTGACCTCCAAGGTGCCAGAAACTAACTTTGTATTAGAACCAACCTCCAACACTACTGCCAATCATGATGAAGTCCAAGAGCTGGAAAACAAAGAAGCAGAAAATGTTTTACCTGGCACTCAAGAAATAGACTTAGTAGGGTCTACTAATGAAGATGATGCAGTAGATCCAGACAAAATGAGGCTGGAGGAAGCTGCAACTAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCTCTATGTATGGTATTGTCAAGTTTCAAGCACTTGTTCGTGGAGGAACAGTTAGACAGTCTAATGTTGGATTTGAAATCCTTGAGAAGTACAATAAAGTTAACCCTCTGGATAGCAAACTTGTCAAGCCAATTGCTATATCAACGAAAATCACAAAGCTGTCAGCAAATGCTTTCATTCGTAAGCTTCTTACTTCGTCAACTACTATAATGGCACTGCGTTTGCTCTATGTTCCCGGTGATCCAAATTCAGTCCTAAATTGGTTGGAGCGCTGGTCAGCATCTCAATTTTGGAAACCAGTTCCACAACCCAAGAAAATTCGAGATACTAAGGCTCAAAGAAAGCATGGCAGTATTACTGTTGGAGATACTCAAACGAGCAAGTCAAAACGTACTAACAGGAAGCTTCCTACTTCGACTTTTGACTCTGTCCCAGTGCAAGCAAATCCTGAATTTGAAAAACCAAAACGAAACACAAGGAAAATTCCAAGTCAACCTTCAGATCCCGTGCAGGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGCGAAAGGTTCATAATCCCGTTGAGAATTTTGTTCCTTCAGAAGTTGAATCTGAGATGCCAAAGGAGCATTTAGAAAAGGCAACAGTTACCTCATCCCTTGCTGTTTCAGAACAGGAGGTCACTAGTTCTAATGAGAATATCAAGAAGGAAGCAGCATTAACTATTCCCAGTGTGCCAGATATAGAAACTACTCCAAGACTTTCAGTTAGTAATGAAGTGTTTGACGCACCAAGCAGTATTCAAGTGACTGTGGAATCGAAGCCCTTGACTGTCGTGGAATCAAAGCCCTTGACTGAAATTACTACTAAAGATAAAAACATTTCTGATGAAGTGGAAAATGAGCCCATAGATTTGCCAGAGCCTATTATTATTTGTAAAGATGAAAATTCTCACTTAACAAATGGAGATTTTAGTCACATGGAAGATCCAATAGGCAGTGAAAAACAGAAACCAAACCGAAAAGCCTCAATTGTAGCAAAGCAGGAACGGGCAGAGAATGGACTACAGCATAGTCCAACACTACCAAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTGAGGGCACAAGGATCCCCAAGATTTGTACAAGATGGAAATGAAAGAAACAACCAGACCCGTCGACATTCTTTACCATCCTCAACCAACGGCAAAATTAGTTCGCATTCACCTAGGACACATAGACCAGTTCAATCAGGTGGCAAAGGGGGCAACAGAAGTGACAGAACTGTATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAGTGGAGGAGGTAA 1782 0.4113 MGKSPGKWIKTVLFGKKSSRSNISKGREKLVNKKEGVIVTSKVPETNFVLEPTSNTTANHDEVQELENKEAENVLPGTQEIDLVGSTNEDDAVDPDKMRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCSMYGIVKFQALVRGGTVRQSNVGFEILEKYNKVNPLDSKLVKPIAISTKITKLSANAFIRKLLTSSTTIMALRLLYVPGDPNSVLNWLERWSASQFWKPVPQPKKIRDTKAQRKHGSITVGDTQTSKSKRTNRKLPTSTFDSVPVQANPEFEKPKRNTRKIPSQPSDPVQENPQSELEKVKRNLRKVHNPVENFVPSEVESEMPKEHLEKATVTSSLAVSEQEVTSSNENIKKEAALTIPSVPDIETTPRLSVSNEVFDAPSSIQVTVESKPLTVVESKPLTEITTKDKNISDEVENEPIDLPEPIIICKDENSHLTNGDFSHMEDPIGSEKQKPNRKASIVAKQERAENGLQHSPTLPSYMAATESAKAKLRAQGSPRFVQDGNERNNQTRRHSLPSSTNGKISSHSPRTHRPVQSGGKGGNRSDRTVSSSRDGNGKVIQAEWRR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04678 593 MobiDBLite consensus disorder prediction 263 292 - -
Spst3g04678 593 SMART iq_5 122 143 IPR000048 GO:0005515
Spst3g04678 593 SMART iq_5 99 121 IPR000048 GO:0005515
Spst3g04678 593 MobiDBLite consensus disorder prediction 568 584 - -
Spst3g04678 593 MobiDBLite consensus disorder prediction 472 491 - -
Spst3g04678 593 Pfam Protein of unknown function (DUF4005) 492 572 IPR025064 -
Spst3g04678 593 MobiDBLite consensus disorder prediction 528 560 - -
Spst3g04678 593 MobiDBLite consensus disorder prediction 464 593 - -
Spst3g04678 593 MobiDBLite consensus disorder prediction 249 323 - -
Spst3g04678 593 Pfam IQ calmodulin-binding motif 124 141 IPR000048 GO:0005515
Spst3g04678 593 Pfam IQ calmodulin-binding motif 102 121 IPR000048 GO:0005515
Spst3g04678 593 PANTHER IQ-DOMAIN 5-RELATED 1 552 - -
Spst3g04678 593 Gene3D - 97 146 - -
Spst3g04678 593 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Spst3g04678 593 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04678 Spst-Chr3 98580588 98587808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04678 1 593 IQD Protein Family AT1G74690 43.333 9.09e-122 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04678 - - gmx:100794636 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04678 3 98580588 98587808 Spst9g02325 9 54566902 54574271 ECH
Spst3g02426 3 68960355 68964228 Spst3g04678 3 98580588 98587808 ECH
Spst2g01565 2 14338581 14342281 Spst3g04678 3 98580588 98587808 ECH
Spst3g04678 3 98580588 98587808 Spst3g04678 3 98580588 98587808 ECH
Spst3g02426 3 68960355 68964228 Spst3g04678 3 98580588 98587808 PCT