LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g04674	ATGGAGCTTGCTTCGGAGAGATCTGGTCACGGAGCAAGTGGAGTCAAGGAAGAAAAGAGAAGTGATGAGTATACTGTAGGCGATGACGATGATGAAGAAGAAGATGGTCCTCATAAACAAGAGATTATCGTCGAGGAACCACCCGTAGCTAATACGGAAAGATCCATACAGCAGGAGGCTCGACCTAGCACGTCCGCAGACAAAAAGGAAGAGGTTGATTGTCAGCTTGAGAGTACTAAAGCTGAGATGGGTGTGGTGAGAGAAGAAAATAAACGGTTGAAGAGGTCTTTGAACAAAATAATGAATGAATATCGGACACTAGAAATGCAATTTCAAGACATACTTAAGCAAGGGACAAAAAAGAAAGTTGATAAAGGAAATGGTAACCAAGAAGATACATTAGAGGAATCGGATCTAGTTTCCCTCAGCCTGGGAAGAGTTCCTAGCAATCAAAGAAACGATGAGAAAATCAAAGTTAATAAACCATTGAAAGATAGTGAAGGGTTTAACCAAGACTTGACTCTTGGACTAGAGTGCAAATCAAAGTCAGGAAGTACAACTGAAGCTTTGCCTAATCCAAGCCCAGAAAACAGTTCTGAAGTTCCAAAGGAAGAAGCTGGGGAGACTTGGCCACCCAAGGAGACACAGAAGACAATGAGAGACACAGAAGACGAACTTGCTCAGCAAAATCCTATGAAGAAACCGCGAGTTTGCGTTAGAGCAAGATGCGACACTCCAACAATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGCTGCACCATTGCACCATCATGCCCAGTCAGAAAACAGGTGCAAAGATGTGTTGATGACATGTCCATTTTAATCACCACGTATGAAGGGACCCACAACCACACTCTACCACCTTCAGCTACTGCCATGGCATCCACAACTTCCGCAGCAGCATCCATGCTTCTTTCTGGTTCATCAACCTCTCACACTGCCGCAACACCTTCAACAACACCAACCACTTCTGCTGCCAATCTCCACGGCCTCAACTTCTATCTATCAGATGGTTCAAAACCAAGGCAATTATACCTGTCCAACCCTGCACTATCATCTTCACCTTCACATCCAACCATCACTCTCGACCTCACTTCACACCCAGCTTCTTCCTCCTCATCACCCTTCGTTAGATTCACTTCAAACTACAACCAACCCAGATACCCCTCTTCATCAAGCCTAAGCTTCAGTAGTTCCTCAGAAACCAATGCATTGTCTTGGAGCAACGGCTTCCTCAATAATACTTCTACTACTCAACCACCATATAGTAGCAGGAACATCCTTGGGAATGTAAACTTTGGGAGACAAGTAGAAAACATGTACCAATCCTACATGCAAAAGAACAACAACAATATTCCAAGCGTTCCTCATGGTGGTGTACCAGCGGATACCATATCTGCAGCAACGAAAGTGATCACAGCAGACCCCACTTTTCAATCGGCTTTGGCAGCAGCGCTTACTTCGTTCATTGGTGGCAGTGTTGGAGGAAATCAAGGTGGTAATATTATTGGAGAAAGTCTAAATTTGGGTCAGAAAATGAAGTGGGGTGAGGTGTTACCAGCGTCAAATAATTCCTCTTCTACCTTGTCTTGCTCAACTTCGAAAGTCAATGGGTATGCATCGAGCTTCTTGAACAAAACACCCGCGAATAATACACAGACTAAAAGTTTGATGTTTCTGCCGCCGTCGTCTTTGCCGTTTTCAACCCACCAAAGTGCATCTGCATCTGCATCTCCTGCTGATAATAGCGACACCACCAATTAA	1830	0.4437	MELASERSGHGASGVKEEKRSDEYTVGDDDDEEEDGPHKQEIIVEEPPVANTERSIQQEARPSTSADKKEEVDCQLESTKAEMGVVREENKRLKRSLNKIMNEYRTLEMQFQDILKQGTKKKVDKGNGNQEDTLEESDLVSLSLGRVPSNQRNDEKIKVNKPLKDSEGFNQDLTLGLECKSKSGSTTEALPNPSPENSSEVPKEEAGETWPPKETQKTMRDTEDELAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSHTAATPSTTPTTSAANLHGLNFYLSDGSKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSPFVRFTSNYNQPRYPSSSSLSFSSSSETNALSWSNGFLNNTSTTQPPYSSRNILGNVNFGRQVENMYQSYMQKNNNNIPSVPHGGVPADTISAATKVITADPTFQSALAAALTSFIGGSVGGNQGGNIIGESLNLGQKMKWGEVLPASNNSSSTLSCSTSKVNGYASSFLNKTPANNTQTKSLMFLPPSSLPFSTHQSASASASPADNSDTTN	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	118	132	-	-
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	182	233	-	-
	Spst3g04674	609	FunFam	probable WRKY transcription factor 31	233	310	-	-
	Spst3g04674	609	Pfam	WRKY DNA -binding domain	249	306	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	371	397	-	-
	Spst3g04674	609	Gene3D	WRKY domain	233	310	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	182	199	-	-
	Spst3g04674	609	SUPERFAMILY	WRKY DNA-binding domain	241	309	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	133	150	-	-
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	118	170	-	-
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	590	609	-	-
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	201	230	-	-
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	1	75	-	-
	Spst3g04674	609	MobiDBLite	consensus disorder prediction	151	165	-	-
	Spst3g04674	609	ProSiteProfiles	WRKY domain profile.	243	309	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Spst3g04674	609	SMART	WRKY_cls	248	308	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Spst3g04674	609	Coils	Coil	76	117	-	-
	Spst3g04674	609	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	60	523	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g04674	Spst-Chr3	98558976	98563009	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g04674	72	516	WRKY Transcription Factor Family	AT1G18860	41.339	5.61e-83	268

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Spst3g04674		WRKY	2e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g04674	-		-	pvu:PHAVU_003G192000g	962.214

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g04674	3	98558976	98563009	Spst9g02323	9	54479520	54484719	ECH
	Spst1g01301	1	15747518	15750569	Spst3g04674	3	98558976	98563009	ECH
	Spst2g01560	2	14303160	14309711	Spst3g04674	3	98558976	98563009	ECH
	Spst3g04674	3	98558976	98563009	Spst3g04674	3	98558976	98563009	ECH
	Spst2g01560	2	14303160	14309711	Spst3g04674	3	98558976	98563009	PCT