Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04659 ATGGCGGCTGGAAGGCCCTTTTCCGACATCACTACCTTCCTGCGCAACCAAACCGCTCCTCCCACTTCCCAACCTCTCGATTCTCTCTTCCTCTCTTCTTCCACTGCTCCTTTTCTTGGTTCGAGATCCATGATGAGTTTCGAAGGAGAAGGAGGGAAGGGGTGTAACGGCTCCTTCTTCCGCGCGTTTGATTTAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAACCTGAGAAGAAGCGCCGTCTCTCTGCCAACCAGGTTCAGTTTCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGAGAGAAAAACCAAGTTGGCCAAAGACCTCGGTTTGCAGCCACGCCAAGTTGCTATTTGGTTCCAGAATCGTCGTGCTCGATGGAAGACCAAACAGCTCGAGAAGGATTACGAGATTCTGCATGAAAGCTTTGAGAGTCTCAAGGCCAACTACGAAAACCTCCTCAGGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCACCTAAGTGAGAAGGTGCTTGCAAGAGAGAAAGAAGAGGGTAAGTTGAAGCAGGCTGAAAGTGGAACAAAGGGATTGCAGGACCAGGAACAACCCCAAAGACCTATACTTGATTCAGTTTCGGAGGGTGAAGGATCCAAAGTGTCTTCTGTTGTCGGGGGTTGCAAACAGGAAGATATCAGTTCAGCCAGGAGTGACATTCTGGACTCAGATAGCCCGCATTACGCGGATGGAGTTCACTCTGCGGTGCTAGAGCACGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCGGACACGTCACAAGATGAAGAAGACAACCTCAGCAAGAGTCTGTACCCGTCGTACCTCTTTCCCAAACTTGAAGATGTAGATTACTCCGACCCCACCGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCACGCCCTTTGGACCTGGGCGTACTAA 969 0.4954 MAAGRPFSDITTFLRNQTAPPTSQPLDSLFLSSSTAPFLGSRSMMSFEGEGGKGCNGSFFRAFDLDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEILHESFESLKANYENLLREKDKLKSEVAHLSEKVLAREKEEGKLKQAESGTKGLQDQEQPQRPILDSVSEGEGSKVSSVVGGCKQEDISSARSDILDSDSPHYADGVHSAVLEHGDSSYVFEPDQSDTSQDEEDNLSKSLYPSYLFPKLEDVDYSDPTESSCNFGFSEEDHALWTWAY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04659 322 MobiDBLite consensus disorder prediction 183 227 - -
Spst3g04659 322 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Spst3g04659 322 MobiDBLite consensus disorder prediction 194 208 - -
Spst3g04659 322 SMART HOX_1 80 141 IPR001356 GO:0003677
Spst3g04659 322 FunFam Homeobox-leucine zipper protein HAT5 75 139 - -
Spst3g04659 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 230 IPR045224 GO:0003700
Spst3g04659 322 Gene3D - 76 152 - -
Spst3g04659 322 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Spst3g04659 322 CDD homeodomain 82 138 IPR001356 GO:0003677
Spst3g04659 322 Coils Coil 136 184 - -
Spst3g04659 322 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Spst3g04659 322 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Spst3g04659 322 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Spst3g04659 322 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Spst3g04659 322 SUPERFAMILY Homeodomain-like 69 139 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04659 Spst-Chr3 98429966 98431260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04659 21 253 Homeobox Transcription Factor Family AT3G01470 39.831 6.53e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g04659 Homeodomain 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04659 - - gmx:100799054 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04659 3 98429966 98431260 Spst9g02316 9 54385065 54386807 ECH
Spst3g04659 3 98429966 98431260 Spst3g04659 3 98429966 98431260 ECH