Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04652 ATGGGGAACTGCAACGCGTGTGTGAGAGATGACGTGGCAGAGTCAAACCGCGGGAGAAAGAAGAAAACCAAACCGAACCCTTACGCGGAGGAGACGCTCCGTTCTGGCGTTCCGATCCGCGTGCTGAAGGACGTGACGTCGCGGAGCCTCATCGGAGACAAGTACGTGATAGGTCGGGAGCTAGGTCGGGGGGAGTTCGGGATAACCTACCTGTGCACGGACCGGGAGACGAAGCAGGAGCTCGCCTGCAAGTCCATCTCAAAGCGCAAGCTGAGGACCGCAGTGGACGTCGAGGACGTCCGCCGCGAGGTCGCTATCATGTCCACGCTGCCGGACCATGCCAACGTCGTGAAGCTCAAAGCCACTTATGAGGACCAAGAGAACGTTCACCTCGTCATGGAGCTTTGCGCCGGTGGCGAGCTCTTCGACCGGATCGTCGCACGTGGCCATTACAGCGAGCGTGCGGCCGCGCACGTTGCGAGAACCATTGCTGAGGTCGTCAGAATGTGTCACGCCAATGGCGTCATGCATCGAGACCTTAAGCCCGAGAATTTCCTCTTTGCGAATAAGAAGGAGAACTCTGTACTTAAGGCCATTGATTTTGGTCTCTCCGTGTTTTTCAAACCTGGGGAGAGATTTTCAGAGATTGTGGGGAGTCCTTACTATATGGCACCGGAGGTATTGAAGAGGAATTATGGGCCAGAAGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGGGTTCCTCCGTTTTGGGCAGAGGACGAAAGAGGGGTGGCTTTAGCGATTTTGAGGGGAGTGATTGACTTCAAGAGAGAACCATGGCCTCAGATTTCTGCAAGTGCTAAGAGCCTCGTGCGCCAGATGTTGGAGCCTGATCCTAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAACATCCCTGGTTGCAAAATGCAAAGAAAGCTTCAAATGTTCCGTTAGGAGATATTGTGAGGACTAGGCTTAAGCAGTTCTCTGTCATGAATAGATTCAAAAAGAGGGCCCTTCGGGTAATTGCAGAGCATTTATCTGTTGAAGAGGTAGAAATCATCAAAGACATGTTTACATTGATGGATACTGACAAAGATGGCAAAGTAACATACGACGAACTGAAGGCTGGGTTACGGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATTAAGATGCTGATGGATGTGGCCGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTCGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAACATTTCCGAAGAGCATTCATGTTTTTTGACAAAGACGGGAGTGGCTATATTGAGTTAGGGGAGCTAGAGACAGCATTATTAGATGAGTCTGGAGAAAACGATACTGCTGTATTGAATGACATCATGCGTGAAGTTGACACGGACAAGGACGGTCGCATCAGTTATGAAGAGTTTGTGGCCATGATGAAAACTGGAACAGATTGGAGAAAAGCATCTAGACAGTATTCAAGGGAGAGGTTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGCTCACTTCAGCTTCATGACGGTATTAGTGGTCAGGCTGTAGTGGTTTGA 1614 0.4969 MGNCNACVRDDVAESNRGRKKKTKPNPYAEETLRSGVPIRVLKDVTSRSLIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHANVVKLKATYEDQENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAEDERGVALAILRGVIDFKREPWPQISASAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGKVTYDELKAGLRKVGSQLAEPEIKMLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRRAFMFFDKDGSGYIELGELETALLDESGENDTAVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04652 537 Gene3D - 322 497 - -
Spst3g04652 537 SUPERFAMILY Protein kinase-like (PK-like) 51 321 IPR011009 -
Spst3g04652 537 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Spst3g04652 537 SUPERFAMILY EF-hand 341 520 IPR011992 -
Spst3g04652 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Spst3g04652 537 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Spst3g04652 537 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Spst3g04652 537 CDD EFh 432 494 IPR002048 GO:0005509
Spst3g04652 537 FunFam calcium-dependent protein kinase 13 141 321 - -
Spst3g04652 537 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04652 537 FunFam Calcium-dependent protein kinase 1 57 140 - -
Spst3g04652 537 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Spst3g04652 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 489 - -
Spst3g04652 537 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04652 537 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Spst3g04652 537 SMART efh_1 360 388 IPR002048 GO:0005509
Spst3g04652 537 SMART efh_1 396 424 IPR002048 GO:0005509
Spst3g04652 537 SMART efh_1 432 460 IPR002048 GO:0005509
Spst3g04652 537 SMART efh_1 468 496 IPR002048 GO:0005509
Spst3g04652 537 FunFam Calcium-dependent protein kinase 7 322 497 - -
Spst3g04652 537 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Spst3g04652 537 Gene3D Phosphorylase Kinase; domain 1 56 140 - -
Spst3g04652 537 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Spst3g04652 537 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Spst3g04652 537 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04652 537 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Spst3g04652 537 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Spst3g04652 537 Pfam EF-hand domain pair 361 420 IPR002048 GO:0005509
Spst3g04652 537 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Spst3g04652 537 CDD STKc_CAMK 54 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04652 Spst-Chr3 98334980 98337994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04652 1 537 EF-hand Containing Proteins AT1G74740 79.336 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Spst3g04652 Pkinase 6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04652 K13412 - gmx:100800559 1019.22