Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04648 ATGACCCTTAAGGGTGGCACAACCCAAGCCTGTGCGGCATGCAAACACCAGAGAAGAAAGTGCACCTCTGAATGCGTTCTTGCACCCTACTTCCCGGCAGACCAAGACAAGGTCTTTCGCAATGTCCACAAGCTTTTCGGAGTCAGCAACATCGTAAAGATATTGAAGATTTTGGAGCCTAACCAGAAGAAAATAGCCATGGACTCTATCATTATTCAAGCGAATTATAGGGATAAGTACCCTGTACATGGCTGTTGGGAAGAGATTTGTAGGCTACAATACCAAATATGGCTTGCAGAAGAAGAGCTTCAAGCAGTTTATCAACAGCTTGAAATATACAGGCAACAACAGCAACAACATCAACATCAACATCACCAAGGCCCTTCCATGCCTGATGATGTTACTTCACAATTAGAATTGGGCATGACACTATGTACTATTAACAATGCACTCCCATTGTTTAATCATCATACTCCACAACCAAACACTTACAACAACAATGTGACTGCATTGTCTGTGTCACAGCAACATTCCTATTCCAATAGTAACAGCGTGGATTATAACTCTCTCTACTTTGATTCCAAAGATAATGTCATTAATCCTTTGTGGGTTCAGTACCCCTGTGCAAATAATAACAATTCTTTAGAAATGCAAACTCCATTGCTTTCTTCCCAGCCATTGGCAATCCAACAAAATGTTGGTGAAGTTTATGATGATATGCCTCCTATTTTTGATTCAGTTGATGATAGACAATCATATATCTATTCCAAGGAGGCTTACGAGTCAAGTTCAGAAGAATCATTCAAAGATATGAGAAAGTGCACTGAGCATGTTTCTGATAATGAATTGAAGAGTGCTGCAGCCTGCTTTAGCCTTACCAGTGTCAACTAA 891 0.404 MTLKGGTTQACAACKHQRRKCTSECVLAPYFPADQDKVFRNVHKLFGVSNIVKILKILEPNQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLAEEELQAVYQQLEIYRQQQQQHQHQHHQGPSMPDDVTSQLELGMTLCTINNALPLFNHHTPQPNTYNNNVTALSVSQQHSYSNSNSVDYNSLYFDSKDNVINPLWVQYPCANNNNSLEMQTPLLSSQPLAIQQNVGEVYDDMPPIFDSVDDRQSYIYSKEAYESSSEESFKDMRKCTEHVSDNELKSAAACFSLTSVN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04648 296 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Spst3g04648 296 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Spst3g04648 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04648 Spst-Chr3 98276103 98277438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04648 1 259 AS2 family AT3G47870 40.924 2.41e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst3g04648 LOB 8.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04648 - - lang:109357116 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04648 3 98276103 98277438 Spst3g04648 3 98276103 98277438 ECH