Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04647 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCGGACATTCTGTCGCGAATTCCAATCGTCGATGCTCCCATACTCATATTCGTTTGCTTCCACAAGGCTTTTCGCTCTGAACTTGATCACCTTCGTCGCTTGGCGGAGACGGCGTCGTTGGAGGATGAGCCACGCCGTTGCCGACAATATATCCTCCAGCTTCAACGCAGGTTCCAGTTTCTGAAACTAGCTCTTAGTTATCACTGTGCTGCGGAAGACGAGGTTATCTTTCTTGCACTGGATGCTCATGTGAAAAATGTCATCTGTACATATTCCCTTGAACATAACAGCACCTCTGATCTTTTTGGGTCTGTTTTTCACTTCTTGGATGAGCTGATGGTTCCTAAAGAGAATATTTCCATGCTGTTCCAAGAACTTGTGTGCTCTATTGGCATATTGCAAACCTACATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCCCTGTTGGTGCAGAAATTATCTACTGAAGAACAGGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAGCAAAAAATCAGAAGTTACTCAGTGTTTAAATGAAATTGCACCAATGGAAAAAACACTGCAAGAGGTTTTGCTTTATTGGCTTAGAAGCAGCCAACAAACCTTTACTGAGACTTGTTTACAGAGAGGAGAATTTCAAGGTGTTGATGGTTTCCTACATATAGAAAGATCACTAGAGCTGAGTTATAATAGGACAACCGAAGAAATTTTAAGTCTGATGAAAGTGAGTGGCCGAGACATAGATGAGGCCAACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAGGAAATTCTGAAAGAACTTCATTTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCAATACTTATCCAACTAAAATTCTTTGCCGACGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCATCCTGTACTGAGTAAATATGCTTATGGCTGGTTGTCCAAGTCTATTGAACAATTTCTTGGTGAAAGTAACATTGAAGATATACAACATTTGCTATTCTATAACTCAGAAAGTGAGCCATTGAGCAAGTTCGTAGAAAAGCTTTGCCAAAAACTTGAATCATTTGTATCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGAAGCTCATGGATTTTCTTTCTTAAATTCTGCAAAGCAGCCTCATAAAGTCTCTGACCAGAATTCTTTGTCCTGTTCCTCCTCTTCTGGACCCAGTAATGTAAAGAAGTATGAGATACCGTACTCCACAGGAATTAATCTGCACATATTTTTTCCTGACGCAATTGGGAAGTTACATCAGTATCCTGCATTATATGGAGCAGAACGATCTTCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCAATCAAGAAAGATTTGGAGTTCCTAGTTCTTGGCTCAGCCCAATTAGAAAAAAATGATATGTTGCTTATGGATTTCCAAAAACGATTCCATCTCATATATTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTATTTCCAGCCTTGGAGGCAAGAGGTAAACTAAAAAACATTAGCCATGCCTACACTTTTGATCACAAACATGAAGTTGAACACTTGAATAAAATATCTCGCATCCTTGATAAGATTTCTGGATTAAATCTTTCAGTTTCTACAATTGATTCAAATACAAAACAGAAGGGACTGCCAAGGTATCAGCATCTATGCAGGAAGCTACTAGAAATGTGCAAATCAATGCACACATCACTTTCCAGTCATATAAACCGCGAGGAAATAGAAATTTGGCCTATAATTAGAAACTTCTTCACAAGTCAGGAACAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGAGCCGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGAAGAGCAACATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACCATGTTCGATGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAGCTAAGGTAAAAGAGAGCTCAAATGATGCTCCTCTTCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAATTTCTAAATGAATTACAAGAAGAATCATCTGCCAACAAAAGCATAATTTTTTTGGAAAATGATCGTATTGGTAATAATGTTGAGCTATCTAACTACAACCTCAATGATGAAGTTAAGGTTCATAATGCAGAACAAAATAATAATCAATGTTCAAAATGCAAAAGTCAATTTCATGACAACAAACATGCTTGCAATGAGGCAGCAGATATCATAAATCCGGTAATCAATGAAGGTAAGTCTTCTCAACTCTGTGACAAGTCTGGGCGTTATGACCGACTTCTGAAATTAAGCCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTCTCGTGACTCTAGCTTAGATCCTCAGAAAAAGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAGACAGCAGATCTCTTCTACAGAAGTCAGTATAAAAAATGATGAACCGGAATTTCCTGGAAAGCATCCATCTTACAGGGATCCTCTCAAACTAATCTACGGTTGTAAACACTACAAGAGGAACTGTAAACTTTTTGCTCCATGTTGCAACCAACTTCATACCTGCATACATTGTCATAACGAGGAATCAGATCATTCAATAGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCGGGGCCACATGCTCAACAAGTTATTGTAATTTATCGATGGGAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTACTGTAACATTTGCCGAGTTGGAAAGGGTTTGGGTGTTGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTTATGATGCATACTTGCAGAGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAAGCCCTCCCATGTGGCCATGTGATGCACTCAACATGTTTTCAGGAATATACATGCTTTAATTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGAATTTCTGATGAGATTTCAGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACTAGAGTTCTATGA 3528 0.3883 MDDGDPSLSDKEEENDEEDVADILSRIPIVDAPILIFVCFHKAFRSELDHLRRLAETASLEDEPRRCRQYILQLQRRFQFLKLALSYHCAAEDEVIFLALDAHVKNVICTYSLEHNSTSDLFGSVFHFLDELMVPKENISMLFQELVCSIGILQTYIYQHMLKEEEQVFPLLVQKLSTEEQASLVWQFICSVPIMLLEEVLPWMVSFLSASKKSEVTQCLNEIAPMEKTLQEVLLYWLRSSQQTFTETCLQRGEFQGVDGFLHIERSLELSYNRTTEEILSLMKVSGRDIDEANQVNVLHLWHNAIKKDLKEILKELHLLRKSSCFQNLDSILIQLKFFADVLIFYSNAQKKFFHPVLSKYAYGWLSKSIEQFLGESNIEDIQHLLFYNSESEPLSKFVEKLCQKLESFVSGVNKQFAFQENEKELQKWNARETSKLEPTYDASGEAHGFSFLNSAKQPHKVSDQNSLSCSSSSGPSNVKKYEIPYSTGINLHIFFPDAIGKLHQYPALYGAERSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAQLEKNDMLLMDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHKHEVEHLNKISRILDKISGLNLSVSTIDSNTKQKGLPRYQHLCRKLLEMCKSMHTSLSSHINREEIEIWPIIRNFFTSQEQGKIIGCMLGRIRAEILQDMIPWLMASLTQEEQHVLMFLWSMATKNTMFDEWLGEWWDGYSLAKVKESSNDAPLQPVEPLEIISKYLSEEFLNELQEESSANKSIIFLENDRIGNNVELSNYNLNDEVKVHNAEQNNNQCSKCKSQFHDNKHACNEAADIINPVINEGKSSQLCDKSGRYDRLLKLSQDDLETVIRRVSRDSSLDPQKKSYIIQNLLMSRWIIRQQISSTEVSIKNDEPEFPGKHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNEESDHSIDRKSITKMMCMKCLMIQPIGATCSTSYCNLSMGKYYCRICKLFDDEREIYHCPYCNICRVGKGLGVDYFHCMNCNACMSRSLMMHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEERISDEISGQTQVILCNDCEKKGATPFHWLYHKCPSCGSYNTRVL 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04647 1175 CDD Hr-like 36 170 - -
Spst3g04647 1175 Pfam Ring finger domain 1067 1110 IPR001841 -
Spst3g04647 1175 CDD RING-H2_Pirh2-like 1068 1111 - -
Spst3g04647 1175 SUPERFAMILY Zinc hairpin stack 1006 1060 IPR037275 -
Spst3g04647 1175 CDD Hr-like 527 673 - -
Spst3g04647 1175 ProSiteProfiles Zinc finger RING-type profile. 1069 1111 IPR001841 -
Spst3g04647 1175 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 570 1175 - -
Spst3g04647 1175 FunFam Zinc finger protein-related isoform 1 1064 1113 - -
Spst3g04647 1175 SUPERFAMILY RING/U-box 1068 1119 - -
Spst3g04647 1175 Pfam Hemerythrin HHE cation binding domain 41 172 IPR012312 -
Spst3g04647 1175 SMART ring_2 1069 1110 IPR001841 -
Spst3g04647 1175 Gene3D nmb1532 protein domain like 32 190 - -
Spst3g04647 1175 Gene3D nmb1532 protein domain like 521 692 - -
Spst3g04647 1175 ProSiteProfiles Zinc finger CTCHY-type profile. 1005 1068 IPR017921 -
Spst3g04647 1175 SUPERFAMILY CHY zinc finger-like 932 997 IPR037274 GO:0008270
Spst3g04647 1175 Pfam Zinc-ribbon 1116 1173 IPR039512 -
Spst3g04647 1175 ProSiteProfiles Zinc finger CHY-type profile. 934 1003 IPR008913 GO:0008270
Spst3g04647 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1062 1113 IPR013083 -
Spst3g04647 1175 Gene3D - 1140 1175 - -
Spst3g04647 1175 Pfam CHY zinc finger 941 1015 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04647 Spst-Chr3 98260804 98271984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04647 524 768 C2H2 Transcription Factor Family AT3G18290 40.154 1.09e-51 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04647 K16276 - gmx:100802706 1358.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04647 3 98260804 98271984 Spst3g04647 3 98260804 98271984 ECH