Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04639 ATGGAACCTTCCCTCGTCAACGACGCCACATTCTCTGCCTCTAACCCGTCCTTGTCCGAGATTTGGCCCTCGCATTTCCCCTCCACCAACAAGAGACCCTCTTCTCTTCTGCTTCACACTCACAATCTCTCTCCCAACAATGATAAACACGTTAAGTTATCACCACCCTCACTTACACATCAAAACGCTCCGTTCCAGGCGCCTCAACCCGACGCCACTTCCGTAGCCGCTGACAAGTCACCCCTTCAAACTCCCAAACCCAAGCCGGACTACATACACGTGCGAGCCAGAAGAGGCCAAGCCACCGATAGCCACAGTCTCGCCGAAAGAGCTAGAAGGGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCCGGGTGTAGCAAGGTAATTGGTAAAGCGCTTGTCCTGGATGAGATAATTAATTATATCCAGTCATTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAGGCAGTTAATTCACGATTGAGTATGAGCCCTTCTATTGAATGTTTTCCTTCAAAAGAAGTTGCAACTCAGCCATTCGACCTTTCCGGAATAATATTTGGATCACAACCGGCCAGGGGATATGCTCAAGGTTCACAACCTGGATGGCTGCATATGCAAATAACTGGTGGTTCAAGGGAGATTCATTGA 672 0.4807 MEPSLVNDATFSASNPSLSEIWPSHFPSTNKRPSSLLLHTHNLSPNNDKHVKLSPPSLTHQNAPFQAPQPDATSVAADKSPLQTPKPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCSKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSMSPSIECFPSKEVATQPFDLSGIIFGSQPARGYAQGSQPGWLHMQITGGSREIH 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04639 223 MobiDBLite consensus disorder prediction 1 69 - -
Spst3g04639 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983
Spst3g04639 223 Coils Coil 147 167 - -
Spst3g04639 223 FunFam Basic helix-loop-helix transcription factor 97 169 - -
Spst3g04639 223 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 193 IPR024097 GO:0006355
Spst3g04639 223 SMART finulus 106 156 IPR011598 GO:0046983
Spst3g04639 223 MobiDBLite consensus disorder prediction 90 112 - -
Spst3g04639 223 MobiDBLite consensus disorder prediction 1 112 - -
Spst3g04639 223 CDD bHLH_AtBPE_like 90 169 - -
Spst3g04639 223 Gene3D - 97 174 IPR036638 GO:0046983
Spst3g04639 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983
Spst3g04639 223 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04639 Spst-Chr3 98178359 98180664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04639 41 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.307 1.71e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g04639 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04639 - - gmx:100799646 323.168