Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04634 ATGTCTCTTGCCTGTGCCGCAGCAGACTCCGTCGGCGAGATCATGCTGTTCGGGGTTCGAGTTGTTGTGGATTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCACAGTATGAGCATCCCCAAGAGGCTAACAACAACGTCAACAAGGATGTTCTCGCCGCTGGTTATGCCTCCGCGGATGATGCTGTGCCTCATAACTCTGGCCGCCATCGCGAGCGTGAGCGGAAGCGAGGGGTTCCCTGGACAGAAGAAGAGCACAAGCTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTATGTGAAAACCAGAACTCCGACTCAGGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGTCGAAGCAACCTGAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGAGACGGTCTCTGGAATTCTAATGGAGGAAGAACAGTTCCAGAATCAAGATACCCTGTCTCATTCACAATCTGTGTGCCCTGCAGTCCCTGAAACTAGCAAAGTGGGTGGGTTTCCAATGATGCCAGTTTATCAGTTTGGAGTTGGTTCTAGAGTGATTTCAGTCCAAGGTGGAAACCCAATAGGAGAACTCACCCTGGGACAAGGAAACATAGAACACAATGTGCCAACCAATCTGGTCCGTGCAGTTCCTGTTGTTGCAGATCCTAAAGTTTCCACAGTGTCTGATATCATCACCGCAAGTTCTAGTTCTGCTGTTGACCCACCCACACTGTCCTTGGGGCTATCCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATTCAGCTTTACATGCCATACCATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCCTAA 882 0.4943 MSLACAAADSVGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQEANNNVNKDVLAAGYASADDAVPHNSGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTETVSGILMEEEQFQNQDTLSHSQSVCPAVPETSKVGGFPMMPVYQFGVGSRVISVQGGNPIGELTLGQGNIEHNVPTNLVRAVPVVADPKVSTVSDIITASSSSAVDPPTLSLGLSFSSDQRQTSSRHSALHAIPCFSNGDSIISVA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04634 293 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
Spst3g04634 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Spst3g04634 293 Gene3D - 80 132 - -
Spst3g04634 293 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Spst3g04634 293 MobiDBLite consensus disorder prediction 60 80 - -
Spst3g04634 293 ProSiteProfiles SANT domain profile. 77 130 IPR017884 -
Spst3g04634 293 MobiDBLite consensus disorder prediction 65 80 - -
Spst3g04634 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
Spst3g04634 293 PANTHER TRANSCRIPTION FACTOR KUA1 5 223 - -
Spst3g04634 293 FunFam transcription factor MYB1R1 80 131 - -
Spst3g04634 293 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Spst3g04634 293 CDD SANT 81 126 IPR001005 -
Spst3g04634 293 SMART sant 78 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04634 Spst-Chr3 98133191 98134640 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst3g04634 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04634 - - gmx:780536 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04634 3 98133191 98134640 Spst9g02287 9 53637246 53637949 PCT