Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04617 ATGGCTTCTTCCGATCCCATCACTTCCAAACACTACGCTTATAACAGAAAACAGAAGTCCTTGGGACTTTTATGCACCAATTTCTTGAGTCTCTATAACAGAGACACCGTGCACTTAATTGGCCTCGATGACGCGGCCACTCGTTTAGGAGTTGAGAGAAGACGGATCTACGACATTGTTAACGTTCTCGAGAGTATTGGGGTTCTCTCAAGGAAAGCGAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTCACTCTTCGGGAGCTCAAAGAAGATGGTCTGAAAGAGAGTTCCAATTCCTTGCGCTGTTCCGCCAACGACGACAACGATAAAGTGTCGGATGACGAAGATGATGAAGAAACACAGTCCAATCCCGCCACTGGAAGTCAAAACGACAAGTTGAACCCTAACTCTACTCAACCCAGACCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTAACCCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTGGAATTGATCTCCCTTGATGAGGCTGCAAAATTGTTGCTTGGAGATGCTCATAACACTTCAATTATGAGAACAAAAGTTAGACGCCTATATGACATCGCAAATGTGCTTTCCTCCATGAATCTTATTGAGAAGACCCATACTTCAGATACGAGAAAACCAGCATTCAGATGGCTGGGTCCTGAAGGGAAGACATGGAATGAGTCAATTCACAAATCAAGTCTGTACGACTCTAGGAAAAGGGCGTTTGGAAGTGATATCACAAACATAAGTTTTGAGAGGAATAAGGTGGAATTATTCACAAATGGGGACTTAAATTCGAATCTTAAGAAGCCAAGAATGGAAAATGATAGTGGGCTGGGTCGGACAGATGAAAACAATTCAAAACAAGGCACAAAACAAACTTCTAAGAGCTATCAGTTTGGTCCATTCGCTCCGGTGTGCGTGCCCAAGATTGGAGCCTCTGGGAATAATATTGTGAAGCAGGTGCATGACTGGGACAGTCTAGCAACGGCACATAGTCCTCAGTATCAAAACGAAGCTTTGAGAGATCTTTTTTCCCATTACATGGAGGCATGGAAATCGTGGTACTCTGAAATTGCTGCGAAGAGGCCATTACAAATTTTGTAA 1146 0.4293 MASSDPITSKHYAYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLKESSNSLRCSANDDNDKVSDDEDDEETQSNPATGSQNDKLNPNSTQPRPLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESIHKSSLYDSRKRAFGSDITNISFERNKVELFTNGDLNSNLKKPRMENDSGLGRTDENNSKQGTKQTSKSYQFGPFAPVCVPKIGASGNNIVKQVHDWDSLATAHSPQYQNEALRDLFSHYMEAWKSWYSEIAAKRPLQIL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04617 381 FunFam E2F transcription factor 8 11 83 - -
Spst3g04617 381 MobiDBLite consensus disorder prediction 100 150 - -
Spst3g04617 381 FunFam E2F transcription factor-like E2FE 147 234 - -
Spst3g04617 381 MobiDBLite consensus disorder prediction 126 146 - -
Spst3g04617 381 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Spst3g04617 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Spst3g04617 381 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Spst3g04617 381 Gene3D - 146 233 IPR036388 -
Spst3g04617 381 Gene3D - 12 83 IPR036388 -
Spst3g04617 381 MobiDBLite consensus disorder prediction 295 310 - -
Spst3g04617 381 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Spst3g04617 381 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Spst3g04617 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Spst3g04617 381 PANTHER TRANSCRIPTION FACTOR E2F 10 345 IPR015633 GO:0000978|GO:0006357
Spst3g04617 381 MobiDBLite consensus disorder prediction 275 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04617 Spst-Chr3 97959493 97962928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04617 11 378 E2F-DP Transcription Factor Family AT3G48160 55.703 2.86e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Spst3g04617 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04617 K09391 - gmx:100795252 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04617 3 97959493 97962928 Spst3g04617 3 97959493 97962928 ECH
Spst3g04617 3 97959493 97962928 Spst9g02277 9 53399420 53405598 PCT