LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g04616	ATGTCCATCCCAATTCCCAGCCGTCAACTATTCATAGACGGTGACTGGAAAGCCCCTGTCCTCAACAAACGGATTCCCATCATCAACCCTTCCACGGAACAGATCATCGGGGATATCCCAGCCGCTACTAAGGAAGACGTCGTCCTTGCCGTTGCCGCCGCTAAAGCCGCCCTCTCCCGCAACAAAGGCGCCGATTGGGCCTCCGCCTCGGGCGCCGTTCGGGCCCGCTATCTCCGTGCCATCGCTGCCAAGGTTACCGAGAAAAAACCCAAGCTCGCAAAACTTGAAGCCATTGATTGTGGAAAACCGCTGGATGAAGCCGCGTGGGACATCGACGATGTCGCTGGTTGCTTTGAGTTTTACGCTGATCTGGCCGAAAAATTGGACTCCAAACAAAAGACTCCGGTGTCTCTTCCCATGGACACATTCAAGAGTTACGTTCTTAAGGAGCCAATTGGGGTTGTGGGATTAATAACTCCCTGGAATTATCCTCTATTGATGGCTACGTGGAAGGTTGCTCCTTCTCTGGCTGCGGGTTGTGCTGCAATATTGAAGCCCTCTGAGTTGGCATCTGTGACTTGTTTGGAGCTAGGTCAGATTTGCAAAGAAGTGGGGCTTCCTCCCGGTGTGTTGAACATTCTCACTGGACTAGGACCTGAAGCCGGTGCGCCATTAGCGGTCCATCCTGATGTCGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAGATTATGACGGCCGCAGCTCAGCTGGTGAAGCCTGTTTCACTAGAGCTTGGTGGAAAAAGTCCAATCATTGTTTTTGAGGATGTTGACCTTGACAAGGCTGCTGAGTGGGCCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTACATGAAAGTATCGCAACAGAGTTTTTGAATAGGATTGTGAAATGGATCAAAAACATCAAAATTTCTGATCCCTTGGAAGAAGGTTGCAGATTAGGTCCTGTTGTAAGTGAAGGACAGTATGAAAAAGTACTGAAGTTTATCTCAAATGCCAAGAGTGAGGGTGCAACCATTTTGACTGGTGGGTCTCGCCCAGAGCATCTCAAGAAGGGATTCTTTGTTGAACCAACTGTCATAACTGATGTGACTACCTCCATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTTCTTTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCTAATGACACTGTATATGGCTTAGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGAATTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCGTTAAACGCAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAATTACTTAAGTGTGAAGCAAGTGACTCAGTACATCTCTGATGAACCGTGGGGCTGGTACCAGTCTCCTTCAAAGCTGTGA	1512	0.4788	MSIPIPSRQLFIDGDWKAPVLNKRIPIINPSTEQIIGDIPAATKEDVVLAVAAAKAALSRNKGADWASASGAVRARYLRAIAAKVTEKKPKLAKLEAIDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDSKQKTPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMATWKVAPSLAAGCAAILKPSELASVTCLELGQICKEVGLPPGVLNILTGLGPEAGAPLAVHPDVDKIAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLIVHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISNAKSEGATILTGGSRPEHLKKGFFVEPTVITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQSPSKL	503

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst3g04616	503	FunFam	NAD/NADP-dependent betaine aldehyde dehydrogenase	12	277	-	-
Spst3g04616	503	FunFam	Betaine aldehyde dehydrogenase	263	454	-	-
Spst3g04616	503	SUPERFAMILY	ALDH-like	5	486	IPR016161	GO:0016491
Spst3g04616	503	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	287	298	IPR016160	GO:0016491
Spst3g04616	503	PANTHER	ALDEHYDE DEHYDROGENASE	4	502	-	-
Spst3g04616	503	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	267	458	IPR016163	GO:0016620
Spst3g04616	503	CDD	ALDH_F10_BADH	27	487	-	-
Spst3g04616	503	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	259	266	IPR029510	GO:0016491
Spst3g04616	503	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	24	483	IPR016162	GO:0016491
Spst3g04616	503	Pfam	Aldehyde dehydrogenase family	23	485	IPR015590	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g04616	Spst-Chr3	97949620	97954131	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g04616	1	501	Aldehyde Dehydrogenase Gene Family	AT1G74920	82.036	0.0	870

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g04616	K00130		-	gmx:100170731	967.222

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g04616	3	97949620	97954131	Spst3g04616	3	97949620	97954131	ECH
	Spst3g04616	3	97949620	97954131	Spst9g02275	9	53223626	53232094	PCT

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