Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04616 ATGTCCATCCCAATTCCCAGCCGTCAACTATTCATAGACGGTGACTGGAAAGCCCCTGTCCTCAACAAACGGATTCCCATCATCAACCCTTCCACGGAACAGATCATCGGGGATATCCCAGCCGCTACTAAGGAAGACGTCGTCCTTGCCGTTGCCGCCGCTAAAGCCGCCCTCTCCCGCAACAAAGGCGCCGATTGGGCCTCCGCCTCGGGCGCCGTTCGGGCCCGCTATCTCCGTGCCATCGCTGCCAAGGTTACCGAGAAAAAACCCAAGCTCGCAAAACTTGAAGCCATTGATTGTGGAAAACCGCTGGATGAAGCCGCGTGGGACATCGACGATGTCGCTGGTTGCTTTGAGTTTTACGCTGATCTGGCCGAAAAATTGGACTCCAAACAAAAGACTCCGGTGTCTCTTCCCATGGACACATTCAAGAGTTACGTTCTTAAGGAGCCAATTGGGGTTGTGGGATTAATAACTCCCTGGAATTATCCTCTATTGATGGCTACGTGGAAGGTTGCTCCTTCTCTGGCTGCGGGTTGTGCTGCAATATTGAAGCCCTCTGAGTTGGCATCTGTGACTTGTTTGGAGCTAGGTCAGATTTGCAAAGAAGTGGGGCTTCCTCCCGGTGTGTTGAACATTCTCACTGGACTAGGACCTGAAGCCGGTGCGCCATTAGCGGTCCATCCTGATGTCGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAGATTATGACGGCCGCAGCTCAGCTGGTGAAGCCTGTTTCACTAGAGCTTGGTGGAAAAAGTCCAATCATTGTTTTTGAGGATGTTGACCTTGACAAGGCTGCTGAGTGGGCCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTACATGAAAGTATCGCAACAGAGTTTTTGAATAGGATTGTGAAATGGATCAAAAACATCAAAATTTCTGATCCCTTGGAAGAAGGTTGCAGATTAGGTCCTGTTGTAAGTGAAGGACAGTATGAAAAAGTACTGAAGTTTATCTCAAATGCCAAGAGTGAGGGTGCAACCATTTTGACTGGTGGGTCTCGCCCAGAGCATCTCAAGAAGGGATTCTTTGTTGAACCAACTGTCATAACTGATGTGACTACCTCCATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTTCTTTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCTAATGACACTGTATATGGCTTAGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACTAAGGCTTTTAAGGCTGGAATTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCGTTAAACGCAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAATTACTTAAGTGTGAAGCAAGTGACTCAGTACATCTCTGATGAACCGTGGGGCTGGTACCAGTCTCCTTCAAAGCTGTGA 1512 0.4788 MSIPIPSRQLFIDGDWKAPVLNKRIPIINPSTEQIIGDIPAATKEDVVLAVAAAKAALSRNKGADWASASGAVRARYLRAIAAKVTEKKPKLAKLEAIDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDSKQKTPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMATWKVAPSLAAGCAAILKPSELASVTCLELGQICKEVGLPPGVLNILTGLGPEAGAPLAVHPDVDKIAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLIVHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISNAKSEGATILTGGSRPEHLKKGFFVEPTVITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQSPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04616 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Spst3g04616 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Spst3g04616 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Spst3g04616 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Spst3g04616 503 PANTHER ALDEHYDE DEHYDROGENASE 4 502 - -
Spst3g04616 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Spst3g04616 503 CDD ALDH_F10_BADH 27 487 - -
Spst3g04616 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Spst3g04616 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Spst3g04616 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04616 Spst-Chr3 97949620 97954131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04616 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 82.036 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04616 K00130 - gmx:100170731 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04616 3 97949620 97954131 Spst3g04616 3 97949620 97954131 ECH
Spst3g04616 3 97949620 97954131 Spst9g02275 9 53223626 53232094 PCT